RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GLT1D1Q96MS3 346 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TTLL2Q9BWV7 592 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SLC6A16Q9GZN6 736 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TCF7L1Q9HCS4 588 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SAGE1Q9NXZ1 904 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 hCG_1818297A0A087WSY0 165 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 CTPS1P17812 591 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 GRM3Q14832 879 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF782Q6ZMW2 699 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SPPL2CQ8IUH8 684 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RPLP0P6Q8NHW5 317 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 KCNN1Q92952 543 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 NKD2Q969F2 451 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ZSWIM3Q96MP5 696 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 VRK1Q99986 396 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 TMEM246Q9BRR3 403 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 CHST7Q9NS84 486 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 EGFL7Q9UHF1 273 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 PREX1Q8TCU6 1659 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 PRORSD1PA6NEY8 169 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RPS3P23396 243 aaKnown RBP eCLIP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 SYVN1Q86TM6 617 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF227Q86WZ6 799 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 ART5Q96L15 291 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 PURBQ96QR8 312 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 NUDT4Q9NZJ9 180 aa12.76□□□□□ -0.37
COL6A3-206ENST00000409809 RBM7Q9Y580 266 aaKnown RBP12.76□□□□□ -0.37
COL6A3-206ENST00000409809 DOK7Q18PE1 504 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 UNC5AQ6ZN44 842 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SPATA6LQ8N4H0 392 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 C10orf82Q8WW14 230 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 POLR2J2Q9GZM3 115 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SPON1Q9HCB6 807 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ACTR3BQ9P1U1 418 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 RNF6Q9Y252 685 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FPGTO14772 594 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 GKN3PP0CG01 181 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 RFX3P48380 749 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 HADHBP55084 474 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PRR5P85299 388 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 GPR162Q16538 588 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 MFSD14CQ5VZR4 134 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF367Q7RTV3 350 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 APTXQ7Z2E3 356 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FEM1CQ96JP0 617 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TUBB1Q9H4B7 451 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 C14orf166Q9Y224 244 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PCDHB1Q9Y5F3 818 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 GRIN2DO15399 1336 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 KRBOX1C9JBD0 128 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TRBC1P01850 177 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PLK1P53350 603 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 CYCSP99999 105 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FGL2Q14314 439 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TAS1R2Q8TE23 839 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PPCDCQ96CD2 204 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 DNAJC1Q96KC8 554 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 OR5B12Q96R08 314 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 CGREF1Q99674 301 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 HNRNPABQ99729 332 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 HCN2Q9UL51 889 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 BCS1LQ9Y276 419 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 HSPA12AO43301 675 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ZMPSTE24O75844 475 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PGLSO95336 258 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PAK4O96013 591 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 RGS19P49795 217 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SEMA3AQ14563 771 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SPATA31A3Q5VYP0 1347 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FRRS1Q6ZNA5 592 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 EEPD1Q7L9B9 569 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ITIH5Q86UX2 942 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TMEM86AQ8N2M4 240 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 OR2L3Q8NG85 312 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FUZQ9BT04 418 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 LRTM1Q9HBL6 345 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ATP6V1G2-DDX39BF2Z307 99 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SNAPINO95295 136 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 UNC93AQ86WB7 457 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 TARS2Q9BW92 718 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ELL3Q9HB65 397 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SNTG1Q9NSN8 517 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 URB1O60287 2271 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FXYD6-FXYD2A0A087WZ82 144 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 BCAS2O75934 225 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 CYB5AP00167 134 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SRSF11Q05519 484 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 LAPTM5Q13571 262 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SLC26A9Q7LBE3 791 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SVBPQ8N300 66 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 STON2Q8WXE9 905 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 POTEKPQ9BYX7 375 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FXYD6Q9H0Q3 95 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF282Q9UDV7 671 aaPredicted RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 ZNF780BQ9Y6R6 833 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 FAM234BA2RU67 622 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 PRAMEF12O95522 483 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 MT-CO1P00395 513 aa12.75□□□□□ -0.37
COL6A3-206ENST00000409809 CLK2P49760 499 aaKnown RBP12.75□□□□□ -0.37
COL6A3-206ENST00000409809 SLC18A2Q05940 514 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms