RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GCNT6Q5T4J0 391 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PIK3R6Q5UE93 754 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM214Q6NUQ4 689 aaKnown RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GTF2H2CQ6P1K8 395 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 BRI3BPQ8WY22 251 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PHPT1Q9NRX4 125 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 EURLQ9NYK6 297 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PKD1L3Q7Z443 1732 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 IQCF5A8MTL0 148 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 AREL1O15033 823 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TCF4P15884 667 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 CLK3P49761 638 aaKnown RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 MTTPP55157 894 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GMFBP60983 142 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TRIM32Q13049 653 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 IL18R1Q13478 541 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 CA9Q16790 459 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 C5orf22Q49AR2 442 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 LINGO4Q6UY18 593 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 RTL4Q6ZR62 310 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 NANOGNBQ7Z5D8 188 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 SVOPLQ8N434 492 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PSMG2Q969U7 264 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TCF25Q9BQ70 676 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 EBF3Q9H4W6 596 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 COQ10BQ9H8M1 238 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 C1orf109Q9NX04 203 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 MAT2BQ9NZL9 334 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 DEC1Q9P2X7 70 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 EIF2B4Q9UI10 523 aaKnown RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TMA7Q9Y2S6 64 aaKnown RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PCDHGB3Q9Y5G1 929 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 DGKBQ9Y6T7 804 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 RGPD1P0DJD0 1748 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 H6PDO95479 791 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 CXCL14O95715 111 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GLUD1P00367 558 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GNRH1P01148 92 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 BCAP31P51572 246 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 CRHR2Q13324 411 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 RPTNQ6XPR3 784 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 UTS2BQ765I0 119 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 RGL4Q8IZJ4 473 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 TMEM199Q8N511 208 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 SCAIQ8N9R8 606 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 SLC38A4Q969I6 547 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 NTAN1Q96AB6 310 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 HMCESQ96FZ2 354 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 KLHL32Q96NJ5 620 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 FCRL5Q96RD9 977 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PDCD10Q9BUL8 212 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 MCUBQ9NWR8 336 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PCDHGA4Q9Y5G9 962 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GPC6Q9Y625 555 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 AQP12BA6NM10 295 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ARHGEF33A8MVX0 844 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 GABRDO14764 452 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SCN2BO60939 215 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 VNN1O95497 513 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 C22orf31O95567 290 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ADH1CP00326 375 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PRKD1Q15139 912 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF730Q6ZMV8 503 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 AQP12AQ8IXF9 295 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 UNC5BQ8IZJ1 945 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SLC13A3Q8WWT9 602 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PHF11Q9UIL8 331 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 NEDD8-MDP1E9PL57 170 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 AIREO43918 545 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 STBD1O95210 358 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 LMO2P25791 158 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SLC7A1P30825 629 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SCNN1AP37088 669 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF460Q14592 562 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 TEAD4Q15561 434 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 DCST1Q5T197 706 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PARGQ86W56 976 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 C11orf24Q96F05 449 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 FAM210AQ96ND0 272 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF317Q96PQ6 595 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 OXCT2Q9BYC2 517 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 FKBPLQ9UIM3 349 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 PCDHGA11Q9Y5H2 935 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SLC30A4O14863 429 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 CHST10O43529 356 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 CCR3P51677 355 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ATXN1P54253 815 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 RGS8P57771 180 aaPredicted RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SF1Q15637 639 aaKnown RBP11.29□□□□□ -0.6
PTPRF-203ENST00000372407 FAM174BQ3ZCQ3 159 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SH3PXD2AQ5TCZ1 1133 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 MED27Q6P2C8 311 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 SERPINA9Q86WD7 417 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 RAB43Q86YS6 212 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 ZDHHC21Q8IVQ6 265 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 MPP5Q8N3R9 675 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 NAT16Q8N8M0 369 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 RASSF5Q8WWW0 418 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 DIRAS2Q96HU8 199 aa11.29□□□□□ -0.6
PTPRF-203ENST00000372407 CHCHD6Q9BRQ6 235 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms