RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GFM2Q969S9 779 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 CARS2Q9HA77 564 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SPC25Q9HBM1 224 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 TLR8Q9NR97 1041 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SMPD4Q9NXE4 827 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 KLQ9UEF7 1012 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 CORINQ9Y5Q5 1042 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 G3V2T6 193 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 ARVCFO00192 962 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 MLYCDO95822 493 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 OGNP20774 298 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 ZFP36L2P47974 494 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 TRIP4Q15650 581 aaPredicted RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 PARP15Q460N3 678 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 PERM1Q5SV97 790 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 AFTPHQ6ULP2 937 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SERINC5Q86VE9 423 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 NKAPQ8N5F7 415 aaKnown RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SLC15A4Q8N697 577 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 KRTCAP2Q8N6L1 136 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 CGREF1Q99674 301 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 IPPKQ9H8X2 491 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 CD320Q9NPF0 282 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 TUBA8Q9NY65 449 aaPredicted RBP11.97□□□□□ -0.49
CLIP3-201ENST00000360535 INVSQ9Y283 1065 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 PCDHB9Q9Y5E1 797 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 PCDHGA11Q9Y5H2 935 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 RAI2Q9Y5P3 530 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 GREB1Q4ZG55 1949 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 SCN4AP35499 1836 aa11.97□□□□□ -0.49
CLIP3-201ENST00000360535 FAM234BA2RU67 622 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 VPS4BO75351 444 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 ANXA6P08133 673 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 ALPIP09923 528 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 LPOP22079 712 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 GATMP50440 423 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 NFATC3Q12968 1075 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 NFE2Q16621 373 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 PTRHD1Q6GMV3 140 aaKnown RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 ANKRD26P1Q6NSI1 321 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 FAM151BQ6UXP7 276 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 CCDC81Q6ZN84 652 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 MRPL10Q7Z7H8 261 aaKnown RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 OR2T12Q8NG77 320 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 SKA2Q8WVK7 121 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 GPR63Q9BZJ6 419 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 TM6SF2Q9BZW4 377 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 NTN4Q9HB63 628 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 PCDH12Q9NPG4 1184 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 NLE1Q9NVX2 485 aaPredicted RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 SEPT3Q9UH03 358 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 PTBP2Q9UKA9 531 aaKnown RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 PCDHB8Q9UN66 801 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 SLC30A1Q9Y6M5 507 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 E2F3O00716 465 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 INSIG1O15503 277 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 SGSHP51688 502 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 EEFSECP57772 596 aaKnown RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 EMX2Q04743 252 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 DAG1Q14118 895 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 CTSL3PQ5NE16 218 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 CROCCP3Q8IVE0 287 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 FRS2Q8WU20 508 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 COMMD8Q9NX08 183 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 AGO1Q9UL18 857 aaKnown RBP11.96□□□□□ -0.49
CLIP3-201ENST00000360535 PCDHGA8Q9Y5G5 932 aa11.96□□□□□ -0.49
CLIP3-201ENST00000360535 K7EPI3 171 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 CAPN15O75808 1086 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 PRKD3O94806 890 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 GJB5O95377 273 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 PRAMEF12O95522 483 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 B3GALT4O96024 378 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 S100BP04271 92 aaPredicted RBP11.96□□□□□ -0.5
CLIP3-201ENST00000360535 PIGAP37287 484 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 HUNKP57058 714 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 DGCR6Q14129 220 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 SPIDRQ14159 915 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 BROXQ5VW32 411 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 MBOAT1Q6ZNC8 495 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 BEND5Q7L4P6 421 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 GOLGA7Q7Z5G4 137 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 SLC22A15Q8IZD6 547 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 C8orf59Q8N0T1 100 aaPredicted RBP11.96□□□□□ -0.5
CLIP3-201ENST00000360535 SCML4Q8N228 414 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 TMCO5AQ8N6Q1 288 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 CDC26Q8NHZ8 85 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 CD200R1Q8TD46 325 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 ACDQ96AP0 544 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 TDRD1Q9BXT4 1180 aaKnown RBP11.96□□□□□ -0.5
CLIP3-201ENST00000360535 IKZF5Q9H5V7 419 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 FAM8A1Q9UBU6 413 aa11.96□□□□□ -0.5
CLIP3-201ENST00000360535 TANC1Q9C0D5 1861 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 UNCXA6NJT0 531 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 XPNPEP2O43895 674 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 SEC22BO75396 215 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 LRATO95237 230 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 RHOCP08134 193 aa11.95□□□□□ -0.5
CLIP3-201ENST00000360535 RPL17P18621 184 aaKnown RBP11.95□□□□□ -0.5
CLIP3-201ENST00000360535 FSHRP23945 695 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms