RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 XPR1Q9UBH6 696 aa19.56■□□□□ 0.72
CLN3-205ENST00000359984 TSR3Q9UJK0 312 aaKnown RBP19.56■□□□□ 0.72
CLN3-205ENST00000359984 PRKAB1Q9Y478 270 aa19.56■□□□□ 0.72
CLN3-205ENST00000359984 A0A1W2PPC4 97 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 FUCA1P04066 466 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 APOA4P06727 396 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 CEACAM5P06731 702 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 TDGF1P13385 188 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 PBLDP30039 288 aaPredicted RBP19.55■□□□□ 0.72
CLN3-205ENST00000359984 KCNC1P48547 511 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 RGS4P49798 205 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 ATP6V0D1P61421 351 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 HSPA14Q0VDF9 509 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 BOP1Q14137 746 aaKnown RBP19.55■□□□□ 0.72
CLN3-205ENST00000359984 ZNF658BQ4V348 819 aaPredicted RBP19.55■□□□□ 0.72
CLN3-205ENST00000359984 PLEKHS1Q5SXH7 462 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 CADM4Q8NFZ8 388 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 SNX19Q92543 992 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 LINC00615Q96LM1 132 aaPredicted RBP19.55■□□□□ 0.72
CLN3-205ENST00000359984 MECRQ9BV79 373 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 GULP1Q9UBP9 304 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 CDYLQ9Y232 598 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 SLC17A4Q9Y2C5 497 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 CACNA1IQ9P0X4 2223 aa19.55■□□□□ 0.72
CLN3-205ENST00000359984 GPR89AB7ZAQ6 455 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 G3V2L1 256 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CDC7O00311 574 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 GPC4O75487 556 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 POP7O75817 140 aaKnown RBP19.54■□□□□ 0.72
CLN3-205ENST00000359984 BPGMP07738 259 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 RBP1P09455 135 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 GPR89BP0CG08 455 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CBSLP0DN79 551 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 BCKDHBP21953 392 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CBSP35520 551 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 KIAA1024LP59773 190 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 RPL6Q02878 288 aaKnown RBP19.54■□□□□ 0.72
CLN3-205ENST00000359984 OR4D1Q15615 310 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CYHR1Q6ZMK1 362 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 PIWIL4Q7Z3Z4 852 aaKnown RBP19.54■□□□□ 0.72
CLN3-205ENST00000359984 ABI3BPQ7Z7G0 1075 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 C11orf96Q7Z7L8 435 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 VRK3Q8IV63 474 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 LILRA3Q8N6C8 439 aaPredicted RBP19.54■□□□□ 0.72
CLN3-205ENST00000359984 TMEM105Q8N8V8 129 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CKAP2Q8WWK9 683 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 KIAA1191Q96A73 305 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 TFB2MQ9H5Q4 396 aaKnown RBP19.54■□□□□ 0.72
CLN3-205ENST00000359984 COPG2Q9UBF2 871 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 FAM8A1Q9UBU6 413 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 MUC3AQ02505 3323 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 A0A0C4DFX4 3053 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CCDC163A0A0D9SF12 145 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 LAMTOR5O43504 91 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 CPA3P15088 417 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 FNTBP49356 437 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 NFATC4Q14934 902 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 TPRG1LQ5T0D9 272 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 SLC36A4Q6YBV0 504 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 LRRTM4Q86VH4 590 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 ASZ1Q8WWH4 475 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 SLCO1B1Q9Y6L6 691 aa19.54■□□□□ 0.72
CLN3-205ENST00000359984 SLC5A10A0PJK1 596 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 NPEPPSL1A6NEC2 478 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 BTN3A1O00481 513 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 GRID2O43424 1007 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 YPEL5P62699 121 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 GNGT1P63211 74 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 PCLAFQ15004 111 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 TSNQ15631 228 aaKnown RBP19.53■□□□□ 0.72
CLN3-205ENST00000359984 PLA2G4EQ3MJ16 856 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 Q6ZSR6 202 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 MAML2Q8IZL2 1156 aaPredicted RBP19.53■□□□□ 0.72
CLN3-205ENST00000359984 RDH11Q8TC12 318 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 ZNHIT2Q9UHR6 403 aa19.53■□□□□ 0.72
CLN3-205ENST00000359984 EIF3FO00303 357 aaPredicted RBP19.52■□□□□ 0.72
CLN3-205ENST00000359984 BIRC5O15392 142 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 MAP3K13O43283 966 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 SLCO2B1O94956 709 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 GSTM1P09488 218 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 ENO3P13929 434 aaPredicted RBP19.52■□□□□ 0.72
CLN3-205ENST00000359984 ALDH3A1P30838 453 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 ARHGAP8P85298 464 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 GSTM4Q03013 218 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 XKR5Q6UX68 686 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 NUDCD3Q8IVD9 361 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 C1orf210Q8IVY1 113 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 MYO1HQ8N1T3 1032 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 OR13H1Q8NG92 308 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 OR2L2Q8NH16 312 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 RHEBL1Q8TAI7 183 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 SCARF2Q96GP6 870 aaPredicted RBP19.52■□□□□ 0.72
CLN3-205ENST00000359984 RMI1Q9H9A7 625 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 FGF22Q9HCT0 170 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 MRPL40Q9NQ50 206 aaKnown RBP19.52■□□□□ 0.72
CLN3-205ENST00000359984 TM7SF3Q9NS93 570 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 SLC23A2Q9UGH3 650 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 MID2Q9UJV3 735 aa19.52■□□□□ 0.72
CLN3-205ENST00000359984 C17orf113A0A1B0GUU1 675 aa19.52■□□□□ 0.71
CLN3-205ENST00000359984 MGAT4DA6NG13 374 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms