RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 RBFAQ8N0V3 343 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 TXNDC5Q8NBS9 432 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 KCNJ9Q92806 393 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 PBXIP1Q96AQ6 731 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 SGF29Q96ES7 293 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 LENG8Q96PV6 779 aaPredicted RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 GPR21Q99679 349 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 CLPBQ9H078 707 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 P2RY12Q9H244 342 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 POMKQ9H5K3 350 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 TFB2MQ9H5Q4 396 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 ALG9Q9H6U8 611 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 DKK3Q9UBP4 350 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 TRMT6Q9UJA5 497 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 FAM50BQ9Y247 325 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 MED16Q9Y2X0 877 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 DYTNA2CJ06 578 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 OTOL1A6NHN0 477 aaPredicted RBP12.65□□□□□ -0.38
CLK3-201ENST00000345005 E5RI56 91 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 VILLO15195 856 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 ZBTB14O43829 449 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 BMP1P13497 986 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 CHRM3P20309 590 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 VIPR1P32241 457 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 GRIA2P42262 883 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 NUDT2P50583 147 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 RAB15P59190 212 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 ARHGEF7Q14155 803 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 CHRNA6Q15825 494 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 SETMARQ53H47 684 aaPredicted RBP12.65□□□□□ -0.38
CLK3-201ENST00000345005 ZNF805Q5CZA5 627 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 CTSL3PQ5NE16 218 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 TRIM67Q6ZTA4 783 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 CCNYL1Q8N7R7 359 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 ZNF513Q8N8E2 541 aaPredicted RBP12.65□□□□□ -0.38
CLK3-201ENST00000345005 NMD3Q96D46 503 aaKnown RBP12.65□□□□□ -0.38
CLK3-201ENST00000345005 HPS4Q9NQG7 708 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 B4GALT6Q9UBX8 382 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 CRLS1Q9UJA2 301 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 AP4B1Q9Y6B7 739 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 PLXNA2O75051 1894 aa12.65□□□□□ -0.38
CLK3-201ENST00000345005 MUC22E2RYF6 1773 aaPredicted RBP12.65□□□□□ -0.38
CLK3-201ENST00000345005 TRPC5OSA6NMA1 111 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 A8MT66 165 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 AGAP14A8MT82 685 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 UPK3BL1B0FP48 263 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 PRRT4C9JH25 899 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 UPK3BL2E5RIL1 263 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 H3BMM5 538 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 NIPSNAP2O75323 286 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 TIMP2P16035 220 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 XPAP23025 273 aaPredicted RBP12.65□□□□□ -0.39
CLK3-201ENST00000345005 ACRV1P26436 265 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 PSMD8P48556 350 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 IL2P60568 153 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 TRAP1Q12931 704 aaKnown RBP12.65□□□□□ -0.39
CLK3-201ENST00000345005 RUNX3Q13761 415 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 ZNF423Q2M1K9 1284 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 FNDC3BQ53EP0 1204 aaKnown RBP12.65□□□□□ -0.39
CLK3-201ENST00000345005 ARL13AQ5H913 290 aaPredicted RBP12.65□□□□□ -0.39
CLK3-201ENST00000345005 FBXL19Q6PCT2 694 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 ATG14Q6ZNE5 492 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 TDHQ8IZJ6 230 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 PHTF2Q8N3S3 785 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 AFAP1L2Q8N4X5 818 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 GPR26Q8NDV2 337 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 HIPK4Q8NE63 616 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 STAG3L4Q8TBR4 150 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 KIAA1191Q96A73 305 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 PTERQ96BW5 349 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 FAR2Q96K12 515 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 RIPOR3Q96MK2 946 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 EFHD1Q9BUP0 239 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 OSBPL11Q9BXB4 747 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 RAD18Q9NS91 495 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 GALNT8Q9NY28 637 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 PKD2L2Q9NZM6 624 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 GNPTGQ9UJJ9 305 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 CDYLQ9Y232 598 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 AK5Q9Y6K8 562 aa12.65□□□□□ -0.39
CLK3-201ENST00000345005 DENND4AQ7Z401 1863 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 EDDM13A0A1B0GTR0 161 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 SOX1O00570 391 aaPredicted RBP12.64□□□□□ -0.39
CLK3-201ENST00000345005 AIM2O14862 343 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 PRNPP04156 253 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 PSMC3P17980 439 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 UGT1A6P19224 532 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 IMPDH1P20839 514 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 UGT1A1P22309 533 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 UGT1A4P22310 534 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 LHCGRP22888 699 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 UGT1A3P35503 534 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 UGT1A5P35504 534 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 KCNC1P48547 511 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 SPINT3P49223 89 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 TUBA4AP68366 448 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 NFKB2Q00653 900 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 SEMG2Q02383 582 aa12.64□□□□□ -0.39
CLK3-201ENST00000345005 DCTN2Q13561 401 aaKnown RBP12.64□□□□□ -0.39
CLK3-201ENST00000345005 APOFQ13790 326 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms