RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ABHD16BQ9H3Z7 469 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 SMURF2Q9HAU4 748 aa8.6□□□□□ -1.03
RTN3-202ENST00000339997 MYPNQ86TC9 1320 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PRAMEF33A0A0G2JMD5 474 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 OR6C70A6NIJ9 312 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PRMT5O14744 637 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 PRAMEF10O60809 474 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 STBD1O95210 358 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 UGT2B4P06133 528 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ZNF24P17028 368 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 MYBPC1Q00872 1141 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SGCGQ13326 291 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TOMM20Q15388 145 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 CRTC2Q53ET0 693 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 CLEC12AQ5QGZ9 265 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 C9orf64Q5T6V5 341 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 LIN54Q6MZP7 749 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SLC26A9Q7LBE3 791 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 FAM83AQ86UY5 434 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 IQCF2Q8IXL9 164 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 RBM4BQ9BQ04 359 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 C2orf49Q9BVC5 232 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 RBM4Q9BWF3 364 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 SGK2Q9HBY8 427 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 NEK6Q9HC98 313 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 H7C4K7 107 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 FGF10O15520 208 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 KPNA6O60684 536 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 MTX2O75431 263 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 STK16O75716 305 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 GOT2P00505 430 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 STATHP02808 62 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 S100A6P06703 90 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TSHRP16473 764 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PSMD4P55036 377 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 MC1RQ01726 317 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 RBBP4Q09028 425 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 HSPB3Q12988 150 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PPP1R3AQ16821 1122 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SLC35G1Q2M3R5 365 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TNFAIP8L2Q6P589 184 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 CHPFQ8IZ52 775 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 NAT8LQ8N9F0 302 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TEX47Q8TBZ9 253 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 KCNC2Q96PR1 638 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ARL5AQ9Y689 179 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 RP1P56715 2156 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SMCO3A2RU48 225 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 CCDC162PA2VCL2 907 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 FABP12A6NFH5 140 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 C2CD4BA6NLJ0 364 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ISM1B1AKI9 464 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 INMTO95050 263 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 CCNB2O95067 398 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 DHFRP00374 187 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ALOX5P09917 674 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 CCNYL3P0C7X3 344 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 RPIAP49247 311 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ACLYP53396 1101 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TAS2R41P59536 307 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 NPTX1Q15818 432 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SH3D19Q5HYK7 790 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 C9orf57Q5W0N0 161 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 USP45Q70EL2 814 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PLD6Q8N2A8 252 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 LSM14AQ8ND56 463 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 TRPV3Q8NET8 790 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 OR10G6Q8NH81 332 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 RDH11Q8TC12 318 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SLC9A6Q92581 669 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TMEM106CQ9BVX2 250 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 DHX33Q9H6R0 707 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 IMP3Q9NV31 184 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 ENOPH1Q9UHY7 261 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PHF11Q9UIL8 331 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 FKBPLQ9UIM3 349 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 IKZF2Q9UKS7 526 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 OR10H1Q9Y4A9 318 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 IGLV3-22A0A075B6J6 115 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 H3BNX3 289 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 APOL3O95236 402 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SMIM10L2AP0DMW4 78 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SMIM10L2BP0DMW5 78 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 WASP42768 502 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 GPR1P46091 355 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 OMPP47874 163 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 OR2B6P58173 313 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 C2orf80Q0P641 193 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 TLR1Q15399 786 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 FNDC3BQ53EP0 1204 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 TREML2Q5T2D2 321 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ZNF697Q5TEC3 545 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 THOC7Q6I9Y2 204 aaKnown RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 TATDN1Q6P1N9 297 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SLC2A7Q6PXP3 512 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 PAQR3Q6TCH7 311 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ABHD15Q6UXT9 468 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 SLC15A3Q8IY34 581 aa8.59□□□□□ -1.03
RTN3-202ENST00000339997 ZNF655Q8N720 491 aaPredicted RBP8.59□□□□□ -1.03
RTN3-202ENST00000339997 FBXO27Q8NI29 283 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms