RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 AKAP13Q12802 2813 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 FAM237BA0A1B0GVD1 139 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 OR52A4PA6NMU1 304 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 SMAPO00193 183 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 CASC3O15234 703 aaKnown RBP13.73□□□□□ -0.21
LIMS1-201ENST00000332345 DUX1O43812 170 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 VAPBO95292 243 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 FTH1P02794 183 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 TUBB4AP04350 444 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 POLBP06746 335 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 CCKBRP32239 447 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 LSSP48449 732 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 ZFP36L1Q07352 338 aaKnown RBP13.73□□□□□ -0.21
LIMS1-201ENST00000332345 RPE65Q16518 533 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 MAP9Q49MG5 647 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 NKAIN2Q5VXU1 208 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 IZUMO3Q5VZ72 239 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 MRNIPQ6NTE8 343 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 CES3Q6UWW8 571 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM26Q6ZUK4 368 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 MAATS1Q7Z4T9 603 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 JAMLQ86YT9 394 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 MPP5Q8N3R9 675 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 SPATA4Q8NEY3 305 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 WDR36Q8NI36 951 aaKnown RBP13.73□□□□□ -0.21
LIMS1-201ENST00000332345 NAT14Q8WUY8 206 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 ZFPM2Q8WW38 1151 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM159Q96B96 161 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 CCDC97Q96F63 343 aaPredicted RBP13.73□□□□□ -0.21
LIMS1-201ENST00000332345 ATXN7L3BQ96GX2 97 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 KRT12Q99456 494 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 TSSK1BQ9BXA7 367 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 FOXP3Q9BZS1 431 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 WWP1Q9H0M0 922 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 POLR1BQ9H9Y6 1135 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 RDH14Q9HBH5 336 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 SLC40A1Q9NP59 571 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 DKK4Q9UBT3 224 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 PSMD13Q9UNM6 376 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 COLEC10Q9Y6Z7 277 aa13.73□□□□□ -0.21
LIMS1-201ENST00000332345 WDFY3Q8IZQ1 3526 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 KIF26BQ2KJY2 2108 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 CCDC187A0A096LP49 1063 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 LILRA5A6NI73 299 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 NDC80O14777 642 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 NDUFS3O75489 264 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 SLC35G4P0C7Q5 338 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 IVDP26440 423 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 MAGEA3P43357 314 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 PLOD1Q02809 727 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 RPA4Q13156 261 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 EIF3IQ13347 325 aaKnown RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 KRT33BQ14525 404 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 MORF4L2Q15014 288 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 ANKRD20A4Q4UJ75 823 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 DNAJC21Q5F1R6 531 aaKnown RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 PHF19Q5T6S3 580 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 KIAA0930Q6ICG6 404 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM71Q6P5X7 295 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 WDR74Q6RFH5 385 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 MICALCLQ6ZW33 695 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 ZNF761Q86XN6 746 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 OTUD6BQ8N6M0 293 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 OR4D9Q8NGE8 314 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 ZCCHC14Q8WYQ9 949 aaKnown RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 NCSTNQ92542 709 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 LIN37Q96GY3 246 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 C16orf45Q96MC5 204 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 TCF12Q99081 682 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 ZMYND15Q9H091 742 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 EPB41L5Q9HCM4 733 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 AKAP7Q9P0M2 348 aaPredicted RBP13.72□□□□□ -0.21
LIMS1-201ENST00000332345 FAM8A1Q9UBU6 413 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 HEBP2Q9Y5Z4 205 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 MAD1L1Q9Y6D9 718 aa13.72□□□□□ -0.21
LIMS1-201ENST00000332345 IFRD1O00458 451 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 PRMT5O14744 637 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 LIN7AO14910 233 aaPredicted RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 TTI1O43156 1089 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 OR1I1O60431 355 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 CAPNS1P04632 268 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 MPOP05164 745 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 AMD1P17707 334 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 NDUFS1P28331 727 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 RBMS1P29558 406 aaKnown RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 CD151P48509 253 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 LIMK2P53671 638 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 GABREP78334 506 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 TRA2AQ13595 282 aaKnown RBP eCLIP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 CAPRIN2Q6IMN6 1127 aaKnown RBP13.71□□□□□ -0.21
LIMS1-201ENST00000332345 RAB11FIP2Q7L804 512 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 B3GNT8Q7Z7M8 397 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 TMEM135Q86UB9 458 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 LRRC6Q86X45 466 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 PLXDC1Q8IUK5 500 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 FBXO39Q8N4B4 442 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 GPR150Q8NGU9 434 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 MDM1Q8TC05 714 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 ELMO1Q92556 727 aa13.71□□□□□ -0.21
LIMS1-201ENST00000332345 SNF8Q96H20 258 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms