RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ATAD1Q8NBU5 361 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 PJA1Q8NG27 643 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 CANT1Q8WVQ1 401 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FBXL18Q96ME1 805 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 DCSTAMPQ9H295 470 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 BPIFA1Q9NP55 256 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 OAZ3Q9UMX2 235 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 MAN2B2Q9Y2E5 1009 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FBP2O00757 339 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 FKTNO75072 461 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 CPNE3O75131 537 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 OR4Q2P0C623 313 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 HNMTP50135 292 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 MVKQ03426 396 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 PRR23CQ6ZRP0 262 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 CCDC28AQ8IWP9 274 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 GRIN3AQ8TCU5 1115 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 PTCD2Q8WV60 388 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 DPF3Q92784 378 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 ACBD6Q9BR61 282 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 CORO1BQ9BR76 489 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 SPATA7Q9P0W8 599 aa11.38□□□□□ -0.59
VPS39-201ENST00000318006 OAS3Q9Y6K5 1087 aaKnown RBP11.38□□□□□ -0.59
VPS39-201ENST00000318006 FAM25EA8MYX2 175 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 GCATO75600 419 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 YAP1P46937 504 aaKnown RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 RORCP51449 518 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 PRKAG1P54619 331 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 AP3S2P59780 193 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 SLC18A2Q05940 514 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TARBP2Q15633 366 aaKnown RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 RNASE12Q5GAN4 147 aaKnown RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 ZNF517Q6ZMY9 492 aaPredicted RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 ZFP28Q8NHY6 868 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ANKHQ9HCJ1 492 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TAS2R7Q9NYW3 318 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 VPS51Q9UID3 782 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 FADS2P1A8MWK0 482 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ADAMDEC1O15204 470 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 DYRK3O43781 588 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ADH1AP07327 375 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 PSKH1P11801 424 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 PPM1AP35813 382 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 KIR3DL1P43629 444 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 MAPK12P53778 367 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 LCP2Q13094 533 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ACAP2Q15057 778 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CMPK2Q5EBM0 449 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TPRG1LQ5T0D9 272 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ZNF613Q6PF04 617 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ZNF438Q7Z4V0 828 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CHPFQ8IZ52 775 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 HAVCR1Q96D42 359 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TSSK3Q96PN8 268 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 C1QTNF1Q9BXJ1 281 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 LRTM1Q9HBL6 345 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 RAD18Q9NS91 495 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 GDAP2Q9NXN4 497 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CNTN6Q9UQ52 1028 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TIMM22Q9Y584 194 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 SH3PXD2BA1X283 911 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 C9JVG2 144 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 BOLA2-SMG1P6H3BVE0 249 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 NOBOXO60393 691 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 RPN2P04844 631 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ACADMP11310 421 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 PORP16435 677 aaPredicted RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 HTR7P34969 479 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 GNG2P59768 71 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ARF5P84085 180 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 MADCAM1Q13477 382 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 NPTX1Q15818 432 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TIGD6Q17RP2 521 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 EMC10Q5UCC4 262 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CYP20A1Q6UW02 462 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TRAPPC5Q8IUR0 188 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 DCAKDQ8WVC6 231 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 KBTBD7Q8WVZ9 684 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 SUSD6Q92537 303 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 PCED1BQ96HM7 432 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ACAT2Q9BWD1 397 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 DSN1Q9H410 356 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CCDC177Q9NQR7 707 aaPredicted RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 CHRAC1Q9NRG0 131 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 TMPRSS4Q9NRS4 437 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 ABCG2Q9UNQ0 655 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 STX16-NPEPL1H3BU86 382 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 STX16O14662 325 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 REM1O75628 298 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 AP2A1O95782 977 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 IFNA16P05015 189 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 CDH4P55283 916 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 FSTL5Q8N475 847 aaPredicted RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 TMEM199Q8N511 208 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 SNTG1Q9NSN8 517 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 GMIPQ9P107 970 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 EIF3KQ9UBQ5 218 aaKnown RBP11.37□□□□□ -0.59
VPS39-201ENST00000318006 MKLN1Q9UL63 735 aa11.37□□□□□ -0.59
VPS39-201ENST00000318006 RAB23Q9ULC3 237 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms