RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 RAMP2O60895 175 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 BCAS1O75363 584 aaPredicted RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 PTPN2P17706 415 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 GLDCP23378 1020 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CORO1AP31146 461 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 NRIP1P48552 1158 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CXCR3P49682 368 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SERPINH1P50454 418 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 ST13P50502 369 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 KCNQ1P51787 676 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TUBA3CQ13748 450 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 COLEC12Q5KU26 742 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TPGS1Q6ZTW0 290 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CCDC28AQ8IWP9 274 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ANKFN1Q8N957 763 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ING5Q8WYH8 240 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 NTAN1Q96AB6 310 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ZNF689Q96CS4 500 aaPredicted RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 CYP2S1Q96SQ9 504 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 KCTD14Q9BQ13 255 aaPredicted RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 ZNF717Q9BY31 904 aaPredicted RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 NANOGQ9H9S0 305 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ADPRHL2Q9NX46 363 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SCN3BQ9NY72 215 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ZDHHC2Q9UIJ5 367 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 WBP11Q9Y2W2 641 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 MTF2Q9Y483 593 aaPredicted RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 GPSM3Q9Y4H4 160 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 HIDE1A8MVS5 230 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 C9JVG2 144 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SLC22A2O15244 555 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 ABCB7O75027 752 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 SLC4A1P02730 911 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 PTGS2P35354 604 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 PLK1P53350 603 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 IRF9Q00978 393 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 NFYCQ13952 458 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 CAPRIN1Q14444 709 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 INAVAQ3KP66 663 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TTC23Q5W5X9 447 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 PLD6Q8N2A8 252 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 KHSRPQ92945 711 aaKnown RBP eCLIP10.78□□□□□ -0.68
LSM3-201ENST00000306024 MUS81Q96NY9 551 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 YTHDF1Q9BYJ9 559 aaKnown RBP10.78□□□□□ -0.68
LSM3-201ENST00000306024 OR2B2Q9GZK3 357 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TLR6Q9Y2C9 796 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 USP3Q9Y6I4 520 aa10.78□□□□□ -0.68
LSM3-201ENST00000306024 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.77□□□□□ -0.68
LSM3-201ENST00000306024 A0A1W2PQ67 120 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 SNTNA6NMZ2 147 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 HHLA1C9JL84 531 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 ACOT8O14734 319 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 METTL18O95568 372 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 RHOCP08134 193 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 DPP6P42658 865 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 IL12RB1P42701 662 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 SPCS2Q15005 226 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 SNAP47Q5SQN1 464 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 SDE2Q6IQ49 451 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 NAPRTQ6XQN6 538 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 TCEAL8Q8IYN2 117 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 MRPL43Q8N983 215 aaKnown RBP10.77□□□□□ -0.68
LSM3-201ENST00000306024 DNAJB14Q8TBM8 379 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 KCTD4Q8WVF5 259 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 RASSF5Q8WWW0 418 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 HTR3CQ8WXA8 447 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 DACT3Q96B18 629 aaPredicted RBP10.77□□□□□ -0.68
LSM3-201ENST00000306024 SIGLEC10Q96LC7 697 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 NODALQ96S42 347 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 APOL2Q9BQE5 337 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 FSD1LQ9BXM9 530 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 ZYG11BQ9C0D3 744 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 LRRC40Q9H9A6 602 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 CFAP97Q9P2B7 532 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 RCOR3Q9P2K3 495 aaPredicted RBP10.77□□□□□ -0.68
LSM3-201ENST00000306024 VPS28Q9UK41 221 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 PDE10AQ9Y233 779 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 RAD54BQ9Y620 910 aa10.77□□□□□ -0.68
LSM3-201ENST00000306024 TFECO14948 347 aaPredicted RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 NCAM2O15394 837 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 FGF10O15520 208 aaPredicted RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 MFSD11O43934 449 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 TMCC2O75069 709 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 TSC22D2O75157 780 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 ATF6P18850 670 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 PLA2G16P53816 162 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 CTBSQ01459 385 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 CHRNB3Q05901 458 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 FRG1Q14331 258 aaKnown RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 CCDC58Q4VC31 144 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 ARMC4Q5T2S8 1044 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 R3HCC1LQ7Z5L2 792 aaKnown RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 DCP2Q8IU60 420 aaKnown RBP10.77□□□□□ -0.69
LSM3-201ENST00000306024 ZDHHC13Q8IUH4 622 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 YAF2Q8IY57 180 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 SPATA6LQ8N4H0 392 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 SPERTQ8NA61 448 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 GRPEL2Q8TAA5 225 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 RMDN1Q96DB5 314 aa10.77□□□□□ -0.69
LSM3-201ENST00000306024 SAMD11Q96NU1 681 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms