RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 UBA6A0AVT1 1052 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-201ENST00000292476 FAM86C2PA6NEL3 165 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 PRAMEF1O95521 474 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ESR1P03372 595 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ZNF7P17097 686 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-201ENST00000292476 VCLP18206 1134 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 FDXRP22570 491 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 VIPR1P32241 457 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 TNFRSF4P43489 277 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 HSPA13P48723 471 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ERFP50548 548 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 PGGT1BP53609 377 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 NAA20P61599 178 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 CEACAM7Q14002 265 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ZNF234Q14588 700 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ZNF789Q5FWF6 425 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 IRAK1BP1Q5VVH5 260 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 LRRC66Q68CR7 880 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 LDB1Q86U70 411 aaPredicted RBP16.57■□□□□ 0.24
CPSF4-201ENST00000292476 ZSWIM9Q86XI8 627 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 MOCOSQ96EN8 888 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 GBP5Q96PP8 586 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 SMIM14Q96QK8 99 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 TSC22D3Q99576 134 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 NDNQ99608 321 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 YIPF3Q9GZM5 350 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 GSTO2Q9H4Y5 243 aa16.57■□□□□ 0.24
CPSF4-201ENST00000292476 H3BMM5 538 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 DENRO43583 198 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 SMIM24O75264 130 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 UBTFL6P0CB48 400 aaPredicted RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ENO3P13929 434 aaPredicted RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 XRCC1P18887 633 aaPredicted RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ACADVLP49748 655 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 AQP4P55087 323 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 PDAP1Q13442 181 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 NFATC2Q13469 925 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 HTR4Q13639 388 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 SEMA3AQ14563 771 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 LPCAT4Q643R3 524 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RBFAQ8N0V3 343 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 SPATA6LQ8N4H0 392 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ULK4Q96C45 1275 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 EID2BQ96D98 161 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 PPP1R36Q96LQ0 422 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RPP25Q9BUL9 199 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ASB8Q9H765 288 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 DYRK4Q9NR20 520 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RAB26Q9ULW5 256 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 PRSS51A0A1B0GVH4 220 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 CCDC189A1A4V9 331 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 C16orf96A6NNT2 1141 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 TMEM233B4DJY2 109 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 C1QTNF3-AMACRE9PGA6 284 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ARNTLO00327 626 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ACOT8O14734 319 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 UBDO15205 165 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RNASEH1O60930 286 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 VPS26AO75436 327 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 PKMP14618 531 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 HNRNPLP14866 589 aaKnown RBP eCLIP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 BPIP17213 487 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ITGB7P26010 798 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ZXDAP98168 799 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 PTSQ03393 145 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ELP6Q0PNE2 266 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 TRAP1Q12931 704 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 MMEL1Q495T6 779 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ZNF678Q5SXM1 525 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 C9orf64Q5T6V5 341 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 FAM46CQ5VWP2 391 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 TICAM1Q8IUC6 712 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 MARVELD2Q8N4S9 558 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 HIPK4Q8NE63 616 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RHEBL1Q8TAI7 183 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ASB9Q96DX5 294 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 SGF29Q96ES7 293 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 LRGUKQ96M69 825 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 CENPKQ9BS16 269 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 SLC25A23Q9BV35 468 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 IL26Q9NPH9 171 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 TRPV5Q9NQA5 729 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 ACSS2Q9NR19 701 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 B4GALT6Q9UBX8 382 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 RIMS3Q9UJD0 308 aa16.56■□□□□ 0.24
CPSF4-201ENST00000292476 CNOT11Q9UKZ1 510 aaKnown RBP16.56■□□□□ 0.24
CPSF4-201ENST00000292476 NEMP2A6NFY4 417 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 PSMD11O00231 422 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 PSMD12O00232 456 aaPredicted RBP16.55■□□□□ 0.24
CPSF4-201ENST00000292476 KPNA3O00505 521 aaPredicted RBP16.55■□□□□ 0.24
CPSF4-201ENST00000292476 PRMT5O14744 637 aaPredicted RBP16.55■□□□□ 0.24
CPSF4-201ENST00000292476 RHOBTB1O94844 696 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 TIMP2P16035 220 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 RPS3P23396 243 aaKnown RBP eCLIP16.55■□□□□ 0.24
CPSF4-201ENST00000292476 CDKN2DP55273 166 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 HERVK_113P63132 956 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 TDGQ13569 410 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 GRAMD1BQ3KR37 738 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 PSAPL1Q6NUJ1 521 aa16.55■□□□□ 0.24
CPSF4-201ENST00000292476 FAM151BQ6UXP7 276 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms