RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 KIAA0319Q5VV43 1072 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SNX32Q86XE0 403 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CAMKVQ8NCB2 501 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 MFSD3Q96ES6 412 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CLSTN3Q9BQT9 956 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 NMUR1Q9HB89 426 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 PREBQ9HCU5 417 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 GPRC5BQ9NZH0 403 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 ABI3Q9P2A4 366 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SLC9A8Q9Y2E8 581 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 ATP6V1E1P36543 226 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 TRIP10Q15642 601 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 QPCTQ16769 361 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CPTPQ5TA50 214 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CNSTQ6PJW8 725 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 OR52K2Q8NGK3 314 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 HERPUD2Q9BSE4 406 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 H3BNC9 293 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 J3KR12 359 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SASH3O75995 380 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 TIE1P35590 1138 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 FOXM1Q08050 763 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CILP2Q8IUL8 1156 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 OR6K2Q8NGY2 324 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 KIAA1191Q96A73 305 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CEP19Q96LK0 163 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 WRAP53Q9BUR4 548 aaKnown RBP13.47□□□□□ -0.25
LDLR-201ENST00000252444 RIOK2Q9BVS4 552 aaKnown RBP13.47□□□□□ -0.25
LDLR-201ENST00000252444 SLC32A1Q9H598 525 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SLC40A1Q9NP59 571 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CYTH4Q9UIA0 394 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 ANAPC2Q9UJX6 822 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 A8MX80 341 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 PIRTP0C851 137 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 HOXC8P31273 242 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 C16orf46Q6P387 395 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 CFAP206Q8IYR0 622 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 DEFB107AQ8IZN7 70 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SETD7Q8WTS6 366 aaKnown RBP13.47□□□□□ -0.25
LDLR-201ENST00000252444 DNAJC9Q8WXX5 260 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 SLC38A3Q99624 504 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 APOL4Q9BPW4 351 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 PSME4Q14997 1843 aa13.47□□□□□ -0.25
LDLR-201ENST00000252444 OR10H2O60403 315 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 SSR2P43308 183 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 GPRIN1Q7Z2K8 1008 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 SCD5Q86SK9 330 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 IFNEQ86WN2 208 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 TSPEARQ8WU66 669 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 KLHL4Q9C0H6 718 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 IMPAD1Q9NX62 359 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 PDP2Q9P2J9 529 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 CFL2Q9Y281 166 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 HNRNPCL2B2RXH8 293 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 NPPAP01160 153 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 ITGB7P26010 798 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 MRPS35P82673 323 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 MPP1Q00013 466 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 TAZQ16635 292 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 ZC3HC1Q86WB0 502 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 LRRN4CLQ8ND94 238 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 WDR92Q96MX6 357 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 TEFMQ96QE5 360 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 PRDM8Q9NQV8 689 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 HAO1Q9UJM8 370 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 ZNF490Q9ULM2 529 aaPredicted RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 SAMD4AQ9UPU9 718 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 YKT6O15498 198 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 UBXN7O94888 489 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 UBOX5O94941 541 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 UNC5CO95185 931 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 RABIFP47224 123 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 COPZ1P61923 177 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 RPL38P63173 70 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 ANKRD54Q6NXT1 300 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 Q6ZVU0 165 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 LYSMD3Q7Z3D4 306 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 FSTL5Q8N475 847 aaPredicted RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 NXNL1Q96CM4 212 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 MYLK2Q9H1R3 596 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 IPPKQ9H8X2 491 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 LYARQ9NX58 379 aaKnown RBP13.46□□□□□ -0.25
LDLR-201ENST00000252444 PHF11Q9UIL8 331 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 PCDHB11Q9Y5F2 797 aa13.46□□□□□ -0.25
LDLR-201ENST00000252444 H0Y3Z8 333 aa13.46□□□□□ -0.26
LDLR-201ENST00000252444 BUD23O43709 281 aaKnown RBP13.46□□□□□ -0.26
LDLR-201ENST00000252444 SHOX2O60902 331 aaPredicted RBP13.46□□□□□ -0.26
LDLR-201ENST00000252444 FOSL2P15408 326 aa13.46□□□□□ -0.26
LDLR-201ENST00000252444 SLC39A13Q96H72 371 aa13.46□□□□□ -0.26
LDLR-201ENST00000252444 MAGED4Q96JG8 741 aa13.46□□□□□ -0.26
LDLR-201ENST00000252444 MRPS30Q9NP92 439 aaKnown RBP13.46□□□□□ -0.26
LDLR-201ENST00000252444 MARCH5Q9NX47 278 aa13.46□□□□□ -0.26
LDLR-201ENST00000252444 DGKEP52429 567 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 DEFB103AP81534 67 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 LRRC66Q68CR7 880 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 FAM124AQ86V42 546 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 CAMK1DQ8IU85 385 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 CDYL2Q8N8U2 506 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 TWIST2Q8WVJ9 160 aa13.45□□□□□ -0.26
LDLR-201ENST00000252444 MOAP1Q96BY2 351 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms