RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 PPP1R3BQ86XI6 285 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 RHOT2Q8IXI1 618 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 BEND7Q8N7W2 519 aaPredicted RBP15.83■□□□□ 0.12
CLN3-246ENST00000636228 BLOC1S5Q8TDH9 187 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 OXNAD1Q96HP4 312 aaPredicted RBP15.83■□□□□ 0.12
CLN3-246ENST00000636228 MRGPRX2Q96LB1 330 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 GOLPH3Q9H4A6 298 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 C10orf88Q9H8K7 445 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 DDX56Q9NY93 547 aaKnown RBP15.83■□□□□ 0.12
CLN3-246ENST00000636228 IL17CQ9P0M4 197 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 KLHL8Q9P2G9 620 aaPredicted RBP15.83■□□□□ 0.12
CLN3-246ENST00000636228 PLAAQ9Y263 795 aa15.83■□□□□ 0.12
CLN3-246ENST00000636228 CFAP20Q9Y6A4 193 aaKnown RBP15.83■□□□□ 0.12
CLN3-246ENST00000636228 PIPSLA2A3N6 862 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 SPOPO43791 374 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 NTRK1P04629 796 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 CCNYL3P0C7X3 344 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 NELFEP18615 380 aaKnown RBP15.82■□□□□ 0.12
CLN3-246ENST00000636228 SPAM1P38567 509 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 HALP42357 657 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 UBAP2LQ14157 1087 aaKnown RBP15.82■□□□□ 0.12
CLN3-246ENST00000636228 PPP2R5EQ16537 467 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 PWWP2BQ6NUJ5 590 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 SPOCD1Q6ZMY3 1216 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 DET1Q7L5Y6 550 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 PID1Q7Z2X4 250 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 RBM12BQ8IXT5 1001 aaKnown RBP15.82■□□□□ 0.12
CLN3-246ENST00000636228 ZNF567Q8N184 647 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 IPMKQ8NFU5 416 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 BRSK1Q8TDC3 778 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 CT55Q8WUE5 264 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 SRPK1Q96SB4 655 aaKnown RBP15.82■□□□□ 0.12
CLN3-246ENST00000636228 MAP3K3Q99759 626 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 TWSG1Q9GZX9 223 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 LHX9Q9NQ69 397 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 EPHA6Q9UF33 1036 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 PADI1Q9ULC6 663 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 KCTD3Q9Y597 815 aa15.82■□□□□ 0.12
CLN3-246ENST00000636228 GLYATL1P3A0A0U1RQE8 302 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 GAPDHSO14556 408 aaPredicted RBP15.81■□□□□ 0.12
CLN3-246ENST00000636228 MTSS1O43312 755 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 CREG1O75629 220 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 EBLN1P0CF75 366 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 FECHP22830 423 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 SLC1A1P43005 524 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 NR2C2P49116 596 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 TUBB3Q13509 450 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 DNASE1L3Q13609 305 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 TRIM14Q14142 442 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 TFDP2Q14188 446 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 SLC1A5Q15758 541 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.81■□□□□ 0.12
CLN3-246ENST00000636228 CRTC2Q53ET0 693 aaPredicted RBP15.81■□□□□ 0.12
CLN3-246ENST00000636228 FNBP1LQ5T0N5 605 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 GPRC6AQ5T6X5 926 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 DUS1LQ6P1R4 473 aaKnown RBP15.81■□□□□ 0.12
CLN3-246ENST00000636228 GLT6D1Q7Z4J2 308 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 SIDT2Q8NBJ9 832 aaKnown RBP15.81■□□□□ 0.12
CLN3-246ENST00000636228 SLC41A2Q96JW4 573 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 PDE7BQ9NP56 450 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 IMP3Q9NV31 184 aaKnown RBP15.81■□□□□ 0.12
CLN3-246ENST00000636228 ANKMY1Q9P2S6 941 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 FAM8A1Q9UBU6 413 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 TLK1Q9UKI8 766 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 TFR2Q9UP52 801 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 POLHQ9Y253 713 aa15.81■□□□□ 0.12
CLN3-246ENST00000636228 GOLGA6L3A6NEY3 463 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 MKRN2OSH3BPM6 223 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 DDX3YO15523 660 aaKnown RBP15.8■□□□□ 0.12
CLN3-246ENST00000636228 MFAP3LO75121 409 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 DNAJB5O75953 348 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 AGTP01019 485 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 MLLT10P55197 1068 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 RPS18P62269 152 aaKnown RBP15.8■□□□□ 0.12
CLN3-246ENST00000636228 KLRB1Q12918 225 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 PLCL1Q15111 1095 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 TAZQ16635 292 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 LDLRAP1Q5SW96 308 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 FBXO38Q6PIJ6 1188 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 BZW1Q7L1Q6 419 aaKnown RBP15.8■□□□□ 0.12
CLN3-246ENST00000636228 VSTM4Q8IW00 320 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 DDHD1Q8NEL9 900 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 P3H4Q92791 437 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 FCRL5Q96RD9 977 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 INSM2Q96T92 566 aaPredicted RBP15.8■□□□□ 0.12
CLN3-246ENST00000636228 RAB33BQ9H082 229 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 WWP1Q9H0M0 922 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 TRABDQ9H4I3 376 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 KCND3Q9UK17 655 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 RARRES3Q9UL19 164 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 ALG6Q9Y672 507 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 RELNP78509 3460 aa15.8■□□□□ 0.12
CLN3-246ENST00000636228 CBFA2T2O43439 604 aa15.79■□□□□ 0.12
CLN3-246ENST00000636228 EPOP01588 193 aa15.79■□□□□ 0.12
CLN3-246ENST00000636228 PDGFAP04085 211 aa15.79■□□□□ 0.12
CLN3-246ENST00000636228 AKT1P31749 480 aa15.79■□□□□ 0.12
CLN3-246ENST00000636228 TNNT3P45378 269 aaPredicted RBP15.79■□□□□ 0.12
CLN3-246ENST00000636228 ARCN1P48444 511 aaKnown RBP15.79■□□□□ 0.12
CLN3-246ENST00000636228 MARCKSL1P49006 195 aa15.79■□□□□ 0.12
CLN3-246ENST00000636228 ARL4DP49703 201 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms