RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 BRF2Q9HAW0 419 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 PRO0461Q9UI25 63 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 GJD2Q9UKL4 321 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 MAU2Q9Y6X3 613 aa2.48□□□□□ -2.01
SCN1A-208ENST00000625916 KANSL1LA0AUZ9 987 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 JRKO75564 520 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 TCEA3O75764 348 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 CKMT2P17540 419 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 ABCD1P33897 745 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 HNF4AP41235 474 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 PRCPP42785 496 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 TRAPPC10P48553 1259 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 COX10Q12887 443 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 OLIG2Q13516 323 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 UBE4AQ14139 1066 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 GPR68Q15743 365 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 CDONQ4KMG0 1287 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 RAB6CQ53S08 254 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 TAF1BQ53T94 588 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF805Q5CZA5 627 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 CXorf66Q5JRM2 361 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-208ENST00000625916 GPRIN3Q6ZVF9 776 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 SDCCAG8Q86SQ7 713 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-208ENST00000625916 DNAJC22Q8N4W6 341 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 RAB42Q8N4Z0 105 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF383Q8NA42 475 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 SPATA5Q8NB90 893 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 SMPDL3BQ92485 455 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 APOPT1Q96IL0 206 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 CLEC7AQ9BXN2 247 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 RAB6CQ9H0N0 254 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 UPF3AQ9H1J1 476 aaKnown RBP2.47□□□□□ -2.01
SCN1A-208ENST00000625916 PIGMQ9H3S5 423 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 UBA2Q9UBT2 640 aaPredicted RBP2.47□□□□□ -2.01
SCN1A-208ENST00000625916 RARRES3Q9UL19 164 aa2.47□□□□□ -2.01
SCN1A-208ENST00000625916 TEX13DA0A0J9YY54 714 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 A0A1W2PQM1 296 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 KPNA7A9QM74 516 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 KLLNB2CW77 178 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 EIF3CLB5ME19 914 aaKnown RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 ZBTB43O43298 467 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 IGKV3-15P01624 115 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 KRTAP1-4P0C5Y4 121 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 UGT1A4P22310 534 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 ARL1P40616 181 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 NKX2-1P43699 371 aaPredicted RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 THOP1P52888 689 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 CDR2Q01850 454 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 P2RY6Q15077 328 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 NECTIN1Q15223 517 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 CYP4A22Q5TCH4 519 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 TSSK4Q6SA08 328 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 CPOQ8IVL8 374 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SLC39A11Q8N1S5 342 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 Q8N377 158 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 RASGEF1CQ8N431 466 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 GCSAMQ8N6F7 178 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SAMD3Q8N6K7 520 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SLC38A9Q8NBW4 561 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 PSPC1Q8WXF1 523 aaKnown RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 HERVK_113Q902F9 699 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SUSD6Q92537 303 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SOSTQ9BQB4 213 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 HERPUD2Q9BSE4 406 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 TMEM39BQ9GZU3 492 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 RANBP17Q9H2T7 1088 aaKnown RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 MAGIXQ9H6Y5 334 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 INTS6Q9UL03 887 aaKnown RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SARDHQ9UL12 918 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 SLC7A7Q9UM01 511 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 CAMK2AQ9UQM7 478 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 PCDHGB3Q9Y5G1 929 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 CLIC4Q9Y696 253 aa2.46□□□□□ -2.02
SCN1A-208ENST00000625916 TDRD15B5MCY1 1934 aaKnown RBP2.46□□□□□ -2.02
SCN1A-208ENST00000625916 IGLV9-49A0A0B4J1Y8 123 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 DNM1LO00429 736 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 ATP2A1O14983 1001 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 PAFAH1B1P43034 410 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 PGFP49763 221 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 RPS18P62269 152 aaKnown RBP2.45□□□□□ -2.02
SCN1A-208ENST00000625916 GALNT2Q10471 571 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 ELAVL2Q12926 359 aaKnown RBP2.45□□□□□ -2.02
SCN1A-208ENST00000625916 PSRC1Q6PGN9 363 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-208ENST00000625916 Q6ZR54 194 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 CCDC190Q86UF4 302 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 GPALPP1Q8IXQ4 340 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 OR2T11Q8NH01 316 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 ZPLD1Q8TCW7 415 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 RASL10AQ92737 203 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 SAAL1Q96ER3 474 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 NSL1Q96IY1 281 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 TRIM6Q9C030 488 aaPredicted RBP2.45□□□□□ -2.02
SCN1A-208ENST00000625916 SLC25A18Q9H1K4 315 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 SEMA6AQ9H2E6 1030 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 OLFML3Q9NRN5 406 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 RNF186Q9NXI6 227 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 EPHA6Q9UF33 1036 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 MKLN1Q9UL63 735 aa2.45□□□□□ -2.02
SCN1A-208ENST00000625916 CROCCQ5TZA2 2017 aa2.44□□□□□ -2.02
SCN1A-208ENST00000625916 NXPH2O95156 264 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms