RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 RMI1Q9H9A7 625 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 VPS37BQ9H9H4 285 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 ARNT2Q9HBZ2 717 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 ASCL3Q9NQ33 180 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 RABGEF1Q9UJ41 708 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 SATB2Q9UPW6 733 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 TMEM98Q9Y2Y6 226 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 MAD1L1Q9Y6D9 718 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 RNF215Q9Y6U7 377 aa12.5□□□□□ -0.41
PNKP-217ENST00000625216 LRRK1Q38SD2 2015 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 A0A1W2PQM1 296 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 SDR42E2A6NKP2 422 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 D6RAR5 112 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 ASMTLO95671 621 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 NDST3O95803 873 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 EPOP01588 193 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 CCKBRP32239 447 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 GPR3P46089 330 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 NPY2RP49146 381 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 INHBCP55103 352 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 MSLNQ13421 630 aaPredicted RBP12.49□□□□□ -0.41
PNKP-217ENST00000625216 GALNT3Q14435 633 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 NR1D2Q14995 579 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 EFTUD2Q15029 972 aaKnown RBP eCLIP12.49□□□□□ -0.411e-8■■■■■ 44
PNKP-217ENST00000625216 SLC1A5Q15758 541 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 C3orf38Q5JPI3 329 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 SIRPB2Q5JXA9 342 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 PDPK2PQ6A1A2 396 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 DOK6Q6PKX4 331 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 UNC5AQ6ZN44 842 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 ZNF438Q7Z4V0 828 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 SPRED1Q7Z699 444 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 GALNT13Q8IUC8 556 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 TMEM159Q96B96 161 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 STAMBPL1Q96FJ0 436 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 DPH1Q9BZG8 443 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 SUDS3Q9H7L9 328 aaPredicted RBP12.49□□□□□ -0.41
PNKP-217ENST00000625216 BFARQ9NZS9 450 aa12.49□□□□□ -0.41
PNKP-217ENST00000625216 NFKBIL1Q9UBC1 381 aaPredicted RBP12.49□□□□□ -0.41
PNKP-217ENST00000625216 ZC3H7BQ9UGR2 993 aaKnown RBP12.49□□□□□ -0.41
PNKP-217ENST00000625216 CNOT6Q9ULM6 557 aaKnown RBP12.49□□□□□ -0.41
PNKP-217ENST00000625216 A0A087WUV0 522 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 A0A1W2PNU3 283 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 RHPN2P1A8MT19 583 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 GPR89AB7ZAQ6 455 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 INPP4BO15327 924 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 C1QAP02745 245 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 GPR89BP0CG08 455 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 PGAM1P18669 254 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 HLA-DPA1P20036 260 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 AK4P27144 223 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 ITPKBP27987 946 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 ACTR1BP42025 376 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 PDX1P52945 283 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 DCDC1P59894 354 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 ACTR1AP61163 376 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 B4GALNT1Q00973 533 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 ZFP36L1Q07352 338 aaKnown RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 BIRC2Q13490 618 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 POU6F1Q14863 301 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 CASC4Q6P4E1 433 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 SLC30A9Q6PML9 568 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 CES3Q6UWW8 571 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 LYSMD3Q7Z3D4 306 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 PALM2Q8IXS6 379 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 FBXO39Q8N4B4 442 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 Q8N9G6 341 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 EPS8L3Q8TE67 593 aaKnown RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 FBF1Q8TES7 1133 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 ZNF669Q96BR6 464 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 PRR11Q96HE9 360 aaPredicted RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 ZSCAN5AQ9BUG6 496 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 GPR63Q9BZJ6 419 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 TRABDQ9H4I3 376 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 RALYQ9UKM9 306 aaKnown RBP12.48□□□□□ -0.41
PNKP-217ENST00000625216 SOX13Q9UN79 622 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 ITPR1Q14643 2758 aa12.48□□□□□ -0.41
PNKP-217ENST00000625216 TCRBV9S1A1TA0A576 114 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CCDC78A2IDD5 438 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CDRT15L2A8MXV6 281 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 H3BQF6 201 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 AP3B1O00203 1094 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 PLD2O14939 933 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 B4GAT1O43505 415 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 DNAJC6O75061 913 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TNFSF15O95150 251 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CPNE6O95741 557 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ITGA2BP08514 1039 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 GSTA2P09210 222 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 UCNP55089 124 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 MAZP56270 477 aaKnown RBP12.47□□□□□ -0.41
PNKP-217ENST00000625216 TLE3Q04726 772 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 SQSTM1Q13501 440 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CRYMQ14894 314 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CEP85LQ5SZL2 805 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 BROXQ5VW32 411 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ZDHHC20Q5W0Z9 365 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TRMT10BQ6PF06 316 aaKnown RBP12.47□□□□□ -0.41
PNKP-217ENST00000625216 MICALCLQ6ZW33 695 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 MARK2Q7KZI7 788 aaKnown RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms