RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 KCNMB4Q86W47 210 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 ARL14Q8N4G2 192 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 OR13J1Q8NGT2 312 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 WDR36Q8NI36 951 aaKnown RBP12.55□□□□□ -0.4
UPF1-208ENST00000600012 CXorf40AQ8TE69 158 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 ARL8AQ96BM9 186 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 PRR11Q96HE9 360 aaPredicted RBP12.55□□□□□ -0.4
UPF1-208ENST00000600012 CYTH2Q99418 400 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 PAFAH2Q99487 392 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 SH3GL2Q99962 352 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 CCDC77Q9BR77 488 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 TMEM109Q9BVC6 243 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 TCEAL2Q9H3H9 227 aaPredicted RBP12.55□□□□□ -0.4
UPF1-208ENST00000600012 UGT1A7Q9HAW7 530 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 UGT1A10Q9HAW8 530 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 UGT1A8Q9HAW9 530 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 HACD3Q9P035 362 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 DKK3Q9UBP4 350 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 UNC13CQ8NB66 2214 aa12.55□□□□□ -0.4
UPF1-208ENST00000600012 ASH1LQ9NR48 2969 aaKnown RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 ATMQ13315 3056 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 CCDC187A0A096LP49 1063 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 C1orf232A0A0U1RR37 186 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 A0A1W2PQ67 120 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 OR51F1A6NGY5 319 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 NPIPB15A6NHN6 443 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 H3BQF6 201 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 J3QKU1 62 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 MMP20O60882 483 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 FAM155BO75949 473 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 VAPBO95292 243 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 SYF2O95926 243 aaKnown RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 TIMP2P16035 220 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 PAMP19021 973 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 LPOP22079 712 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 LHCGRP22888 699 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 BLKP51451 505 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 SUOXP51687 545 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 FRG1Q14331 258 aaKnown RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 TMED2Q15363 201 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 SKIDA1Q1XH10 827 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 HSP90AA5PQ58FG0 334 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 TTMPQ5BVD1 217 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 ARMC3Q5W041 872 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 BRAT1Q6PJG6 821 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 USP45Q70EL2 814 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 MARK2Q7KZI7 788 aaKnown RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 NLRP9Q7RTR0 991 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 CLEC14AQ86T13 490 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 FSTL5Q8N475 847 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 TP53I13Q8NBR0 393 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 OR4K2Q8NGD2 314 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 STYXQ8WUJ0 223 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 TTC9Q92623 222 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 MCCC1Q96RQ3 725 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 CCDC3Q9BQI4 270 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 GPR63Q9BZJ6 419 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 ROPN1BQ9BZX4 212 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 CLPBQ9H078 707 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 ROPN1Q9HAT0 212 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 TMBIM4Q9HC24 238 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 MAGEE1Q9HCI5 957 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 BPIFA1Q9NP55 256 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 IARS2Q9NSE4 1012 aaKnown RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 VPS18Q9P253 973 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 B4GALT6Q9UBX8 382 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 TBK1Q9UHD2 729 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 PNMA8BQ9ULN7 279 aaPredicted RBP12.54□□□□□ -0.4
UPF1-208ENST00000600012 PADI4Q9UM07 663 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 DOLKQ9UPQ8 538 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 PPIL1Q9Y3C6 166 aa12.54□□□□□ -0.4
UPF1-208ENST00000600012 CCDC162PA2VCL2 907 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 GOLGA6L10A6NI86 522 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 C2orf81A6NN90 581 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 K7ENP7 123 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 YY2O15391 372 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 TNFSF15O95150 251 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 CLDN7O95471 211 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 GOT2P00505 430 aaKnown RBP12.53□□□□□ -0.4
UPF1-208ENST00000600012 ITGA2BP08514 1039 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 MYZAPP0CAP1 466 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 XPAP23025 273 aaPredicted RBP12.53□□□□□ -0.4
UPF1-208ENST00000600012 MSH2P43246 934 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 ARCN1P48444 511 aaKnown RBP12.53□□□□□ -0.4
UPF1-208ENST00000600012 PDX1P52945 283 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 PRAMEP78395 509 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 ACVR1Q04771 509 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 ELP6Q0PNE2 266 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 LAMB3Q13751 1172 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 IRF4Q15306 451 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 ELOCQ15369 112 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 UGP2Q16851 508 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 PDPK2PQ6A1A2 396 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 INO80CQ6PI98 192 aaPredicted RBP12.53□□□□□ -0.4
UPF1-208ENST00000600012 FOXR1Q6PIV2 292 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 LVRNQ6Q4G3 990 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 LRRC6Q86X45 466 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 NDUFAF2Q8N183 169 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 SDR16C5Q8N3Y7 309 aa12.53□□□□□ -0.4
UPF1-208ENST00000600012 GOLGA6L1Q8N7Z2 621 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms