RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CAMK2BQ13554 666 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 DHX34Q14147 1143 aaKnown RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 DBN1Q16643 649 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 CLPPQ16740 277 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 FASTKD1Q53R41 847 aaKnown RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 AARS2Q5JTZ9 985 aaKnown RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 RNASEH2BQ5TBB1 312 aaKnown RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 METRNLQ641Q3 311 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 ABRAXAS1Q6UWZ7 409 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 HOOK3Q86VS8 718 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 JAMLQ86YT9 394 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 Q8N9G6 341 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 OR2L2Q8NH16 312 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 SH3KBP1Q96B97 665 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 TRIM44Q96DX7 344 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 C16orf45Q96MC5 204 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 TMEM121BQ9BXQ6 578 aaPredicted RBP11.69□□□□□ -0.54
LIG3-213ENST00000590630 LRRN3Q9H3W5 708 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 SYNDIG1Q9H7V2 258 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 CPNE7Q9UBL6 633 aa11.69□□□□□ -0.54
LIG3-213ENST00000590630 APC2O95996 2303 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 CELSR3Q9NYQ7 3312 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 TRBV23OR9-2A0A075B6M9 112 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 C17orf113A0A1B0GUU1 675 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 A0A1W2PQM1 296 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 F8W8V4 182 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 GOLGA8MH3BSY2 632 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 SMAPO00193 183 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 PPM1DO15297 605 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 CSO75390 466 aaKnown RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 PRSS56P0CW18 603 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 BRAFP15056 766 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 PAMP19021 973 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 RPL10P27635 214 aaKnown RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 NMBRP28336 390 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 ALDH4A1P30038 563 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 PBLDP30039 288 aaPredicted RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 HALP42357 657 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 UBE2IP63279 158 aaKnown RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 GPLD1P80108 840 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 NFE2L1Q14494 772 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 SEPT7Q16181 437 aaKnown RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 ISXQ2M1V0 245 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 CASC4Q6P4E1 433 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 UNQ6494/PRO21346Q6UXR6 183 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 MARCH9Q86YJ5 346 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 MPP5Q8N3R9 675 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 BEND7Q8N7W2 519 aaPredicted RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 SPATA4Q8NEY3 305 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 CCDC97Q96F63 343 aaPredicted RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 SLC38A3Q99624 504 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.68□□□□□ -0.54
LIG3-213ENST00000590630 NRSN2Q9GZP1 204 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 UCK1Q9HA47 277 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 CATSPERZQ9NTU4 200 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 POT1Q9NUX5 634 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 KCNK4Q9NYG8 393 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 ANAPC5Q9UJX4 755 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 ACSL5Q9ULC5 683 aa11.68□□□□□ -0.54
LIG3-213ENST00000590630 USP24Q9UPU5 2620 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 FAM237BA0A1B0GVD1 139 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TMEM8BA6NDV4 472 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TMX2-CTNND1H3BSU7 103 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 CD3EAPO15446 510 aaKnown RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 TTI1O43156 1089 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 B4GAT1O43505 415 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 CPNE6O95741 557 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 VIPP01282 170 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TUBB4AP04350 444 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 IVDP26440 423 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TTPAP49638 278 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 PDX1P52945 283 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 EPHA4P54764 986 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 DRG2P55039 364 aaKnown RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 OR1D5P58170 312 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 SQSTM1Q13501 440 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 MORF4L2Q15014 288 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 MAP9Q49MG5 647 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 IZUMO3Q5VZ72 239 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 KIAA0930Q6ICG6 404 aaPredicted RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 FAM83HQ6ZRV2 1179 aaPredicted RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 MICALCLQ6ZW33 695 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 PIM3Q86V86 326 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TRIM48Q8IWZ4 208 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 RBM12BQ8IXT5 1001 aaKnown RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 CLDN19Q8N6F1 224 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 OR10G6Q8NH81 332 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 HM13Q8TCT9 377 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 NAT14Q8WUY8 206 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 NXPE2Q96DL1 559 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 MFSD3Q96ES6 412 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 TMEM74Q96NL1 305 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 KRT12Q99456 494 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 DPYSL5Q9BPU6 564 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 CCM2Q9BSQ5 444 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 EPB41L1Q9H4G0 881 aa11.67□□□□□ -0.54
LIG3-213ENST00000590630 SCHIP1Q9P0W5 487 aaPredicted RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 ZNF624Q9P2J8 865 aaPredicted RBP11.67□□□□□ -0.54
LIG3-213ENST00000590630 WDR37Q9Y2I8 494 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms