RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 C8orf4Q9NR00 106 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 HEBP1Q9NRV9 189 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 IL17CQ9P0M4 197 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 ATXN10Q9UBB4 475 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 DHRS7Q9Y394 339 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 PRAMEF12O95522 483 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 ENO2P09104 434 aaPredicted RBP22.49■■□□□ 1.19
VPS53-211ENST00000571805 HMGA1P17096 107 aaKnown RBP22.49■■□□□ 1.19
VPS53-211ENST00000571805 SOX11P35716 441 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 HTR6P50406 440 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 RPS6KA3P51812 740 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 SLC2A7Q6PXP3 512 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 DPP10Q8N608 796 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 BIRC7Q96CA5 298 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 RNF38Q9H0F5 515 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 TUBA8Q9NY65 449 aaPredicted RBP22.49■■□□□ 1.19
VPS53-211ENST00000571805 LHX3Q9UBR4 397 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 PTBP2Q9UKA9 531 aaKnown RBP22.49■■□□□ 1.19
VPS53-211ENST00000571805 RPL17P18621 184 aaKnown RBP22.49■■□□□ 1.19
VPS53-211ENST00000571805 PRKG2Q13237 762 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 PCBP2Q15366 365 aaKnown RBP eCLIP22.49■■□□□ 1.195e-9■■■■■ 51.4
VPS53-211ENST00000571805 SLC8B1Q6J4K2 584 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 HID1Q8IV36 788 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 TBC1D21Q8IYX1 336 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 CEP295NLQ96MC4 621 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 ACTL8Q9H568 366 aa22.49■■□□□ 1.19
VPS53-211ENST00000571805 KANSL1LA0AUZ9 987 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 GRXCR2A6NFK2 248 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 FZD6O60353 706 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 CAPN1P07384 714 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 SELPP16109 830 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 OR4D2P58180 307 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 AASDHQ4L235 1098 aaPredicted RBP22.48■■□□□ 1.19
VPS53-211ENST00000571805 TTC33Q6PID6 262 aaPredicted RBP22.48■■□□□ 1.19
VPS53-211ENST00000571805 SBSNQ6UWP8 590 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 DLEU7Q6UYE1 221 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 ARHGAP22Q7Z5H3 698 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 ZNF786Q8N393 782 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 METTL6Q8TCB7 284 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 ADAMTS16Q8TE57 1224 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 A0A1W2PQ45 241 aaPredicted RBP22.48■■□□□ 1.19
VPS53-211ENST00000571805 A0A1W2PQY0 241 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 OR7A17O14581 309 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 EI24O14681 340 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 CACNG1Q06432 222 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 CRIPAKQ8N1N5 446 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 STK40Q8N2I9 435 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 SEPT8Q92599 483 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 LRRC3Q9BY71 257 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 ZNF639Q9UID6 485 aa22.48■■□□□ 1.19
VPS53-211ENST00000571805 PLXNA4Q9HCM2 1894 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 A0A087WXM4 84 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 IRF1P10914 325 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 TUFMP49411 452 aaKnown RBP22.47■■□□□ 1.19
VPS53-211ENST00000571805 GOLGA7Q7Z5G4 137 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 PROSER1Q86XN7 944 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 TNIP2Q8NFZ5 429 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 CCDC97Q96F63 343 aaPredicted RBP22.47■■□□□ 1.19
VPS53-211ENST00000571805 TMEM175Q9BSA9 504 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 CDK4P11802 303 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 OR1D2P34982 312 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 TCTN1Q2MV58 587 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 IL27RAQ6UWB1 636 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 LPCAT2Q7L5N7 544 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 ERI1Q8IV48 349 aaKnown RBP22.47■■□□□ 1.19
VPS53-211ENST00000571805 OR4F6Q8NGB9 312 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 PIF1Q9H611 641 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 CD320Q9NPF0 282 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 TIMMDC1Q9NPL8 285 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 LRFN2Q9ULH4 789 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 ZNF711Q9Y462 761 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 PCDHB9Q9Y5E1 797 aa22.47■■□□□ 1.19
VPS53-211ENST00000571805 DYTNA2CJ06 578 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 ARNTLO00327 626 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 PRMT5O14744 637 aaPredicted RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 ANKRD28O15084 1053 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 LSM1O15116 133 aaKnown RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 SEC24AO95486 1093 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 G6PDP11413 515 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 MZF1P28698 734 aaPredicted RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 NUDT8Q8WV74 236 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 FBXL20Q96IG2 436 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 KLF16Q9BXK1 252 aaPredicted RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 MTRRQ9UBK8 725 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 TNPO3Q9Y5L0 923 aaKnown RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 TET1Q8NFU7 2136 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 CLIC3O95833 236 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 HMGCLP35914 325 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 TWF1Q12792 350 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 GTF2H2Q13888 395 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 CYBRD1Q53TN4 286 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 INO80DQ53TQ3 878 aaPredicted RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 GTF2H2CQ6P1K8 395 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 RALGPS2Q86X27 583 aaPredicted RBP22.46■■□□□ 1.19
VPS53-211ENST00000571805 NPAS4Q8IUM7 802 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 RIMKLAQ8IXN7 391 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 BPIFB1Q8TDL5 484 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 CYGBQ8WWM9 190 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 HBEGFQ99075 208 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 STARD7Q9NQZ5 370 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms