RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KMOO15229 486 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 CD3EAPO15446 510 aaKnown RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 GRID2O43424 1007 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 AP2A2O94973 939 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 VCLP18206 1134 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 OGNP20774 298 aaKnown RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 CLCNKAP51800 687 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 LONRF1Q17RB8 773 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 KCTD19Q17RG1 926 aaPredicted RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 KANSL1Q7Z3B3 1105 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 GPR155Q7Z3F1 870 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 RD3Q7Z3Z2 195 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 TRIM74Q86UV6 250 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 LRRTM4Q86VH4 590 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 SERPINA9Q86WD7 417 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.3■□□□□ 0.84
VPS53-210ENST00000571456 FBXO25Q8TCJ0 367 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 NXPE2Q96DL1 559 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 TIMM29Q9BSF4 260 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 LRRC61Q9BV99 259 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 VPS37BQ9H9H4 285 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 EPB41L5Q9HCM4 733 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 NLGN3Q9NZ94 848 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 ZC3H7BQ9UGR2 993 aaKnown RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 KLF15Q9UIH9 416 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 TMEM98Q9Y2Y6 226 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 ARID1BQ8NFD5 2236 aaPredicted RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 PIKFYVEQ9Y2I7 2098 aa20.3■□□□□ 0.84
VPS53-210ENST00000571456 ZCWPW2A0A1B0GU75 182 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 CCDC78A2IDD5 438 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 RRP8O43159 456 aaKnown RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 VAPBO95292 243 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 ANXA6P08133 673 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 GSTA2P09210 222 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 ZNF8P17098 575 aaPredicted RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 GNPDA1P46926 289 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 ILF2Q12905 390 aaKnown RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 PDIA2Q13087 525 aaKnown RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 ZNF542PQ5EBM4 170 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 PRAMEF14Q5SWL7 426 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 LRRC6Q86X45 466 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 RBFAQ8N0V3 343 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 EIF1ADQ8N9N8 165 aaKnown RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 GPBAR1Q8TDU6 330 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 ZNHIT2Q9UHR6 403 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 DMGDHQ9UI17 866 aaKnown RBP20.29■□□□□ 0.84
VPS53-210ENST00000571456 DOLKQ9UPQ8 538 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 COL12A1Q99715 3063 aa20.29■□□□□ 0.84
VPS53-210ENST00000571456 CCL22O00626 93 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 TNFSF14O43557 240 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 ATP1B2P14415 290 aaPredicted RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 ZNF7P17097 686 aaPredicted RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 ELK3P41970 407 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 ARCN1P48444 511 aaKnown RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 POLD2P49005 469 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 THOC5Q13769 683 aaKnown RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 CRYMQ14894 314 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 BCL7AQ4VC05 210 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 MSS51Q4VC12 460 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 NEPROQ6NW34 567 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 ZNF449Q6P9G9 518 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 PCSK4Q6UW60 755 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 AGGF1Q8N302 714 aaeCLIP20.28■□□□□ 0.84
VPS53-210ENST00000571456 OR4C6Q8NH72 309 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 LMX1AQ8TE12 382 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 PYROXD1Q8WU10 500 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 GLMNQ92990 594 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 FAM167BQ9BTA0 163 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 MRPL40Q9NQ50 206 aaKnown RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 PNMA8BQ9ULN7 279 aaPredicted RBP20.28■□□□□ 0.84
VPS53-210ENST00000571456 BTBD3Q9Y2F9 522 aa20.28■□□□□ 0.84
VPS53-210ENST00000571456 TLX3O43711 291 aaPredicted RBP20.27■□□□□ 0.84
VPS53-210ENST00000571456 SPAG6O75602 509 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 SLC2A4P14672 509 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 ADARP55265 1226 aaKnown RBP20.27■□□□□ 0.84
VPS53-210ENST00000571456 BNIP3Q12983 259 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 DBN1Q16643 649 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 TYSND1Q2T9J0 566 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 CCDC157Q569K6 752 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 STEAP4Q687X5 459 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 ZDHHC24Q6UX98 284 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 CYS1Q717R9 158 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 TRAPPC5Q8IUR0 188 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 PIANPQ8IYJ0 282 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 ZBED8Q8IZ13 594 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 SLC25A45Q8N413 288 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 FAM181AQ8N9Y4 354 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.27■□□□□ 0.84
VPS53-210ENST00000571456 LINC00615Q96LM1 132 aaPredicted RBP20.27■□□□□ 0.84
VPS53-210ENST00000571456 TSSK1BQ9BXA7 367 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 ZDHHC18Q9NUE0 388 aa20.27■□□□□ 0.84
VPS53-210ENST00000571456 INTS10Q9NVR2 710 aaKnown RBP20.27■□□□□ 0.84
VPS53-210ENST00000571456 ARHGEF17Q96PE2 2063 aaPredicted RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 C17orf113A0A1B0GUU1 675 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 SLU7O95391 586 aaKnown RBP20.26■□□□□ 0.83
VPS53-210ENST00000571456 FUCA1P04066 466 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 ARNTP27540 789 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 PRLHRP49683 370 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 KCNC4Q03721 635 aa20.26■□□□□ 0.83
VPS53-210ENST00000571456 DMPKQ09013 629 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms