RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PRKAR1AP10644 381 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 ZNF28P17035 718 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 HALP42357 657 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 CTSCP53634 463 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 CDC20Q12834 499 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 CRTC2Q53ET0 693 aaPredicted RBP15.77■□□□□ 0.11
CLN3-229ENST00000567963 CACHD1Q5VU97 1274 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 TMEM220Q6QAJ8 160 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 PRSS42Q7Z5A4 293 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 KLHL6Q8WZ60 621 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 STARD8Q92502 1023 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 RBM41Q96IZ5 413 aaKnown RBP15.77■□□□□ 0.11
CLN3-229ENST00000567963 HEMGNQ9BXL5 484 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 FSD1LQ9BXM9 530 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 ZCCHC2Q9C0B9 1178 aaKnown RBP15.77■□□□□ 0.11
CLN3-229ENST00000567963 RSPH14Q9UHP6 348 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 PCDHA13Q9Y5I0 950 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 RPS6KL1Q9Y6S9 549 aa15.77■□□□□ 0.11
CLN3-229ENST00000567963 OR2AG2A6NM03 316 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 APOC4-APOC2K7ER74 178 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 APOC2P02655 101 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 MC1RQ01726 317 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 XRCC4Q13426 336 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 GPRC6AQ5T6X5 926 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 C11orf63Q6NUN7 778 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 IRGCQ6NXR0 463 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 C6orf15Q6UXA7 325 aaPredicted RBP15.76■□□□□ 0.11
CLN3-229ENST00000567963 FAM92BQ6ZTR7 304 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 BBS12Q6ZW61 710 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 CCDC170Q8IYT3 715 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 KRT35Q92764 455 aa15.76■□□□□ 0.11
CLN3-229ENST00000567963 SPTA1P02549 2419 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 AGTP01019 485 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 FGF5P12034 268 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 NELFEP18615 380 aaKnown RBP15.75■□□□□ 0.11
CLN3-229ENST00000567963 TCN2P20062 427 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 FECHP22830 423 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 F8A1P23610 371 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 RBL1P28749 1068 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 OAS2P29728 719 aaKnown RBP15.75■□□□□ 0.11
CLN3-229ENST00000567963 NFE2L1Q14494 772 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 PTPRCAPQ14761 206 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 RPE65Q16518 533 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 SARM1Q6SZW1 724 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 FAM83HQ6ZRV2 1179 aaPredicted RBP15.75■□□□□ 0.11
CLN3-229ENST00000567963 DAAM2Q86T65 1068 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 PTRH1Q86Y79 214 aaKnown RBP15.75■□□□□ 0.11
CLN3-229ENST00000567963 RASGRP3Q8IV61 690 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 ZNF398Q8TD17 642 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 RNF31Q96EP0 1072 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 GORASP1Q9BQQ3 440 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 C10orf88Q9H8K7 445 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 SMOXQ9NWM0 555 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 SEMA5BQ9P283 1151 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 PSMD13Q9UNM6 376 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 MRPS18BQ9Y676 258 aaKnown RBP15.75■□□□□ 0.11
CLN3-229ENST00000567963 ARL5AQ9Y689 179 aa15.75■□□□□ 0.11
CLN3-229ENST00000567963 GOLGA6L3A6NEY3 463 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 H7C0C1 242 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 STX7O15400 261 aaKnown RBP15.74■□□□□ 0.11
CLN3-229ENST00000567963 ANXA9O76027 345 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 KIAA0754O94854 1291 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 NDUFA10O95299 355 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 DLSTP36957 453 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 ATP5OP48047 213 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 GEMP55040 296 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 COPS2P61201 443 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 SPA17Q15506 151 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 DEFB109BQ30KR1 87 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 METRNLQ641Q3 311 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 C16orf46Q6P387 395 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 RANBP10Q6VN20 620 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 GALNT6Q8NCL4 622 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 GPR150Q8NGU9 434 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 APOBEC4Q8WW27 367 aaKnown RBP15.74■□□□□ 0.11
CLN3-229ENST00000567963 ELMO2Q96JJ3 720 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 ZNF514Q96K75 400 aaPredicted RBP15.74■□□□□ 0.11
CLN3-229ENST00000567963 TRIM5Q9C035 493 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 GBA3Q9H227 469 aa15.74■□□□□ 0.11
CLN3-229ENST00000567963 IGHV5-51A0A0C4DH38 117 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 SPAG6O75602 509 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 PRAMEF1O95521 474 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 MSH3P20585 1137 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 LPOP22079 712 aaPredicted RBP15.73■□□□□ 0.11
CLN3-229ENST00000567963 PPP1CAP62136 330 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 TAF1AQ15573 450 aaPredicted RBP15.73■□□□□ 0.11
CLN3-229ENST00000567963 LONRF2Q1L5Z9 754 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.73■□□□□ 0.11
CLN3-229ENST00000567963 FNBP1LQ5T0N5 605 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 ATP1A1-AS1Q5TC04 95 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 KLHL35Q6PF15 583 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 PPP1R3BQ86XI6 285 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 BEND7Q8N7W2 519 aaPredicted RBP15.73■□□□□ 0.11
CLN3-229ENST00000567963 UBXN4Q92575 508 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 STAMBPL1Q96FJ0 436 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 SLC41A2Q96JW4 573 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 FICDQ9BVA6 458 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 CROTQ9UKG9 612 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 EFR3BQ9Y2G0 817 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 PCDHB3Q9Y5E6 796 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms