RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SGTAO43765 313 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 TCEA3O75764 348 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 FTH1P02794 183 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 CTAGE8P0CG41 777 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 OGNP20774 298 aaKnown RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 ARNTP27540 789 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 DRG2P55039 364 aaKnown RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 ADARP55265 1226 aaKnown RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SHC2P98077 582 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 BIRC2Q13490 618 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 CLPPQ16740 277 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 TYSND1Q2T9J0 566 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 ANKRD20A4Q4UJ75 823 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 IYDQ6PHW0 289 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 DET1Q7L5Y6 550 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SDCCAG8Q86SQ7 713 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 CTAGE6Q86UF2 777 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 TMPRSS12Q86WS5 348 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 LRRC6Q86X45 466 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 CTAGE4Q8IX94 777 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 ARL14Q8N4G2 192 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 MMGT1Q8N4V1 131 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 CALML6Q8TD86 181 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SH3KBP1Q96B97 665 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 TSSK1BQ9BXA7 367 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SARS2Q9NP81 518 aaKnown RBP12.78□□□□□ -0.36
NEDD8-208ENST00000560427 POT1Q9NUX5 634 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 ACSL5Q9ULC5 683 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 SNX24Q9Y343 169 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 FAM169AQ9Y6X4 670 aa12.78□□□□□ -0.36
NEDD8-208ENST00000560427 PDZK1P1A8MUH7 402 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 E7ESA3 106 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 PRMT5O14744 637 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 TP73O15350 636 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 SNX2O60749 519 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 OR56A5P0C7T3 313 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 PRSS56P0CW18 603 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 RPS3P23396 243 aaKnown RBP eCLIP12.77□□□□□ -0.372e-15■■■□□ 16.4
NEDD8-208ENST00000560427 HALP42357 657 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 GPR3P46089 330 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 PLOD1Q02809 727 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 DHX9Q08211 1270 aaKnown RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 RPA4Q13156 261 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 LONRF1Q17RB8 773 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 GLE1Q53GS7 698 aaKnown RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 SPANXN3Q5MJ09 141 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 SLC9B2Q86UD5 537 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 RBM12BQ8IXT5 1001 aaKnown RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 AGGF1Q8N302 714 aaeCLIP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 OTUD6BQ8N6M0 293 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 PNPLA1Q8N8W4 532 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 SLC37A2Q8TED4 501 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 CCDC74AQ96AQ1 378 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 CCDC3Q9BQI4 270 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 CCM2Q9BSQ5 444 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 FAM167BQ9BTA0 163 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 FAM129AQ9BZQ8 928 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 FOXP3Q9BZS1 431 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 ABCG4Q9H172 646 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 UCK1Q9HA47 277 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 MARCH4Q9P2E8 410 aaPredicted RBP12.77□□□□□ -0.37
NEDD8-208ENST00000560427 LRIT1Q9P2V4 623 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 DNAJC16Q9Y2G8 782 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 RNF215Q9Y6U7 377 aa12.77□□□□□ -0.37
NEDD8-208ENST00000560427 FAM221BA6H8Z2 402 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 RHPN2P1A8MT19 583 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 EIF3HO15372 352 aaKnown RBP eCLIP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 OPA1O60313 960 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 NDUFS3O75489 264 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 SLC35G4P0C7Q5 338 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 MYF5P13349 255 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 XRCC1P18887 633 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 MAZP56270 477 aaKnown RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 UBE2IP63279 158 aaKnown RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 INSM1Q01101 510 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 FOXC1Q12948 553 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 THOC5Q13769 683 aaKnown RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 FRG1Q14331 258 aaKnown RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 NFE2L1Q14494 772 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 SEMA3AQ14563 771 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CRYMQ14894 314 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 BBS9Q3SYG4 887 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 PERM1Q5SV97 790 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 METRNLQ641Q3 311 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 NEPROQ6NW34 567 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 ZNF449Q6P9G9 518 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CES3Q6UWW8 571 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 DHRS13Q6UX07 377 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CENPUQ71F23 418 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 TMPRSS7Q7RTY8 843 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CILP2Q8IUL8 1156 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CLDN19Q8N6F1 224 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 SEC14L1Q92503 715 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 GRAMD1AQ96CP6 724 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 CCDC97Q96F63 343 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 FCRL3Q96P31 734 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 DPH5Q9H2P9 285 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms