RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TMEM164Q5U3C3 297 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 TRIM48Q8IWZ4 208 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 ZNF398Q8TD17 642 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 SH3KBP1Q96B97 665 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 WBP1Q96G27 269 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 C9orf72Q96LT7 481 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 SPATA13Q96N96 652 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 SRPK1Q96SB4 655 aaKnown RBP17.4■□□□□ 0.38
HDDC3-205ENST00000559898 DPYSL5Q9BPU6 564 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 SLC12A9Q9BXP2 914 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 STN1Q9H668 368 aaKnown RBP17.4■□□□□ 0.38
HDDC3-205ENST00000559898 HACD3Q9P035 362 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 PILRAQ9UKJ1 303 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 EFR3BQ9Y2G0 817 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 CAPN6Q9Y6Q1 641 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 BOD1L1Q8NFC6 3051 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 LOC101059948A0A1B0GTJ6 334 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 CAPN5O15484 640 aaPredicted RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 PRAMEF1O95521 474 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 FAM87AP0C7U9 286 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 TPH1P17752 444 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 IDSP22304 550 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 GTF2H3Q13889 308 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 TAF1AQ15573 450 aaPredicted RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 RPE65Q16518 533 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 KCTD19Q17RG1 926 aaPredicted RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 FNBP1LQ5T0N5 605 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 DCAF12Q5T6F0 453 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 AGAP9Q5VTM2 703 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 CERS6Q6ZMG9 384 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 FAM92BQ6ZTR7 304 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 KIAA1328Q86T90 577 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 SPDYE1Q8NFV5 336 aaPredicted RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 TBL1YQ9BQ87 522 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 B3GNT4Q9C0J1 378 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 UCK1Q9HA47 277 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 LUC7LQ9NQ29 371 aaKnown RBP17.39■□□□□ 0.37
HDDC3-205ENST00000559898 PKP3Q9Y446 797 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 PCDHB11Q9Y5F2 797 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 ZNF462Q96JM2 2506 aa17.39■□□□□ 0.37
HDDC3-205ENST00000559898 ANXA9O76027 345 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 AMD1P17707 334 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 LPOP22079 712 aaPredicted RBP17.38■□□□□ 0.37
HDDC3-205ENST00000559898 CD82P27701 267 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 ZNF140P52738 457 aaPredicted RBP17.38■□□□□ 0.37
HDDC3-205ENST00000559898 KLF1Q13351 362 aaPredicted RBP17.38■□□□□ 0.37
HDDC3-205ENST00000559898 LDLRAP1Q5SW96 308 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 ITPRIPL1Q6GPH6 555 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 WASH2PQ6VEQ5 465 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 PRUNE1Q86TP1 453 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 AMZ2Q86W34 360 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 CACNA2D3Q8IZS8 1091 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 FAM71DQ8N9W8 422 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 DTX3LQ8TDB6 740 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 CXorf40BQ96DE9 158 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 ELMO2Q96JJ3 720 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 INSM2Q96T92 566 aaPredicted RBP17.38■□□□□ 0.37
HDDC3-205ENST00000559898 WWP1Q9H0M0 922 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 ASB8Q9H765 288 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 WASH6PQ9NQA3 447 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 IL17BQ9UHF5 180 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 AMFRQ9UKV5 643 aa17.38■□□□□ 0.37
HDDC3-205ENST00000559898 COL6A6A6NMZ7 2263 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 CCDC78A2IDD5 438 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 LDB2O43679 373 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 SRP72O76094 671 aaKnown RBP17.37■□□□□ 0.37
HDDC3-205ENST00000559898 F8A1P23610 371 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 AKT1P31749 480 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 DMPKQ09013 629 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 ATP1A1-AS1Q5TC04 95 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 KCTD11Q693B1 232 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 PEX26Q7Z412 305 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 KLHDC8BQ8IXV7 354 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 IL22RA1Q8N6P7 574 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 BRSK1Q8TDC3 778 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 ATG4AQ8WYN0 398 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 MED8Q96G25 268 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 DNAJC1Q96KC8 554 aaKnown RBP17.37■□□□□ 0.37
HDDC3-205ENST00000559898 PPM1MQ96MI6 270 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 TTC25Q96NG3 672 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 FBXO8Q9NRD0 319 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 POT1Q9NUX5 634 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 SMOXQ9NWM0 555 aa17.37■□□□□ 0.37
HDDC3-205ENST00000559898 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.37■□□□□ 0.37
HDDC3-205ENST00000559898 MRPS18BQ9Y676 258 aaKnown RBP17.37■□□□□ 0.37
HDDC3-205ENST00000559898 TENM4Q6N022 2769 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 NKX2-8O15522 239 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 STK17BO94768 372 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 TJP3O95049 919 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 DLGAP3O95886 979 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 ITGB6P18564 788 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 MSH3P20585 1137 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 TNNT3P45378 269 aaPredicted RBP17.36■□□□□ 0.37
HDDC3-205ENST00000559898 CAPZBP47756 277 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 FOXM1Q08050 763 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 ITGA9Q13797 1035 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 KCNAB1Q14722 419 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 IRGCQ6NXR0 463 aa17.36■□□□□ 0.37
HDDC3-205ENST00000559898 FBXO38Q6PIJ6 1188 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms