RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PTRHD1Q6GMV3 140 aaKnown RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 LAYNQ6UX15 382 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 RNF165Q6ZSG1 346 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 C16orf59Q7L2K0 433 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SYVN1Q86TM6 617 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 FAM217AQ8IXS0 508 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PIANPQ8IYJ0 282 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CPNE9Q8IYJ1 553 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 MYO1HQ8N1T3 1032 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PNPLA1Q8N8W4 532 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PDPRQ8NCN5 879 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 GRIN3AQ8TCU5 1115 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ACDQ96AP0 544 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PPWD1Q96BP3 646 aaKnown RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 TMEM169Q96HH4 297 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SLC45A3Q96JT2 553 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CNBD2Q96M20 576 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF558Q96NG5 402 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 KCNA7Q96RP8 456 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ARPC5LQ9BPX5 153 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 PCDHAC1Q9H158 963 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 CCM2LQ9NUG4 571 aaPredicted RBP7.18□□□□□ -1.26
VPS13C-206ENST00000558338 BTRCQ9Y297 605 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 SNX13Q9Y5W8 968 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ACTL7AQ9Y615 435 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 COL4A6Q14031 1691 aa7.18□□□□□ -1.26
VPS13C-206ENST00000558338 ANAPC1Q9H1A4 1944 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 LRRC14BA6NHZ5 514 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 ENO4A6NNW6 628 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 ZNF839A8K0R7 811 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 E2F3O00716 465 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 AKAP10O43572 662 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 AOC2O75106 756 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SLC22A3O75751 556 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 IGSF6O95976 241 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 OTCP00480 354 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 ARSAP15289 507 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PCSK2P16519 638 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 RPL17P18621 184 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 DGKAP23743 735 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 FASP25445 335 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GRIA3P42263 894 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GJA8P48165 433 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PIK3CGP48736 1102 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CLCN7P51798 805 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 POLR2JP52435 117 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SMAD3P84022 425 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 BCL2L1Q07817 233 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 MAD2L1Q13257 205 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 TGFBIQ15582 683 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CNPY1Q3B7I2 92 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 TTLL9Q3SXZ7 439 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 VPS26BQ4G0F5 336 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 TBCELQ5QJ74 424 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CWF19L1Q69YN2 538 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 TTC23LQ6PF05 361 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SNX20Q7Z614 316 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 RETREG3Q86VR2 466 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PROSER1Q86XN7 944 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PTRH1Q86Y79 214 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CHERPQ8IWX8 916 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SLC15A3Q8IY34 581 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GPR65Q8IYL9 337 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 ALDH16A1Q8IZ83 802 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GALNT4Q8N4A0 578 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 TMEM199Q8N511 208 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PHC3Q8NDX5 983 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 LRTOMTQ8WZ04 291 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SLCO4A1Q96BD0 722 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CAPNS2Q96L46 248 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 NSMCE3Q96MG7 304 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 KCTD14Q9BQ13 255 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 CLSTN3Q9BQT9 956 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 FEM1AQ9BSK4 669 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 C9orf16Q9BUW7 83 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 FAM126AQ9BYI3 521 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SLC2A11Q9BYW1 496 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 HIPK3Q9H422 1215 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SRA1Q9HD15 236 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 HEBP1Q9NRV9 189 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GKN1Q9NS71 199 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PNPLA3Q9NST1 481 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 MAP10Q9P2G4 905 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 EIF2B4Q9UI10 523 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 VPS51Q9UID3 782 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 OARD1Q9Y530 152 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PCDHB9Q9Y5E1 797 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 ARHGAP10A1A4S6 786 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 NCF1BA6NI72 391 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 NCF1CA8MVU1 366 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 FXYD1O00168 92 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 EIF3FO00303 357 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 GFRA2O00451 464 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 NRG2O14511 850 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 OR1I1O60431 355 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SYNCRIPO60506 623 aaKnown RBP7.17□□□□□ -1.26
VPS13C-206ENST00000558338 SNAP91O60641 907 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 WDR47O94967 919 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 UPP2O95045 317 aa7.17□□□□□ -1.26
VPS13C-206ENST00000558338 PRAMEF1O95521 474 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms