RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 HCAR3P49019 387 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 OXCT1P55809 520 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ADARB1P78563 741 aaKnown RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 IL5RAQ01344 420 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 MOGQ16653 247 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 C1QTNF12Q5T7M4 302 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 BROXQ5VW32 411 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 KANK2Q63ZY3 851 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ZNF773Q6PK81 442 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 GCNT7Q6ZNI0 430 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SCD5Q86SK9 330 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 PIANPQ8IYJ0 282 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 KRTCAP2Q8N6L1 136 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ARL10Q8N8L6 244 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 OR4K2Q8NGD2 314 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 EEF1AKMT1Q8WVE0 214 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ATOH8Q96SQ7 321 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SIAEQ9HAT2 523 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 CDH7Q9ULB5 785 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SPO11Q9Y5K1 396 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 GSTA4O15217 222 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 SNAP91O60641 907 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 CRHBPP24387 322 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 EPHA2P29317 976 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 HOXD12P35452 270 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 LCP2Q13094 533 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 RFTN2Q52LD8 501 aaPredicted RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 RAB41Q5JT25 222 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 MORN1Q5T089 497 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 LETMD1Q6P1Q0 360 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 RPRD1AQ96P16 312 aaPredicted RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 SMOC2Q9H3U7 446 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 CATSPERBQ9H7T0 1116 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 PRM3Q9NNZ6 103 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 SLC6A13Q9NSD5 602 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 PSME2Q9UL46 239 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 ERGIC3Q9Y282 383 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 G3V2T6 193 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 SULT1C4O75897 302 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 PRKD3O94806 890 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 FADS2O95864 444 aaKnown RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 PEX11BO96011 259 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 ALPLP05186 524 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 CAPN1P07384 714 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 KCNE1P15382 129 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 PFKLP17858 780 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 PSMB9P28065 219 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 HK3P52790 923 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 BNIP2Q12982 314 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 BTG3Q14201 252 aaPredicted RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 RCAN2Q14206 197 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 MFSD10Q14728 455 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 CCL14Q16627 93 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 FSCN1Q16658 493 aaKnown RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 C6orf136Q5SQH8 315 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 DET1Q7L5Y6 550 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 ZDHHC13Q8IUH4 622 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 C8orf59Q8N0T1 100 aaPredicted RBP12.19□□□□□ -0.46
LDLR-205ENST00000557933 CALML6Q8TD86 181 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 NSMCE3Q96MG7 304 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 BDH2Q9BUT1 245 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 SLC30A1Q9Y6M5 507 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 ZSWIM8A7E2V4 1837 aa12.19□□□□□ -0.46
LDLR-205ENST00000557933 SH3BGRLO75368 114 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 NADKO95544 446 aaPredicted RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 IDO1P14902 403 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 RGRP47804 291 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 TPTEP56180 551 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 RPL38P63173 70 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 FAM189BP81408 668 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 MADCAM1Q13477 382 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 GTF2H3Q13889 308 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 DAG1Q14118 895 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 SLC39A12Q504Y0 691 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ANKS6Q68DC2 871 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 THAP5Q7Z6K1 395 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 PLEKHH3Q7Z736 793 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 RTL3Q8N8U3 475 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 PSMA8Q8TAA3 256 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 METTL6Q8TCB7 284 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 L3HYPDHQ96EM0 354 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 IMP4Q96G21 291 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 APOL5Q9BWW9 433 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 KATNBL1Q9H079 304 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 SLC25A51Q9H1U9 297 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ABCB10Q9NRK6 738 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 INTS10Q9NVR2 710 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 ST3GAL5Q9UNP4 418 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 MED16Q9Y2X0 877 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 PCDHGC4Q9Y5F7 938 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 SYCE1LA8MT33 242 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 MYO1GB0I1T2 1018 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 CACNG3O60359 315 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 GPIP06744 558 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 ATXN1LP0C7T5 689 aaKnown RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 ERVPABLB-1P60509 514 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 DUSP28Q4G0W2 176 aa12.18□□□□□ -0.46
LDLR-205ENST00000557933 SETMARQ53H47 684 aaPredicted RBP12.18□□□□□ -0.46
LDLR-205ENST00000557933 CATSPEREQ5SY80 951 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms