RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ATP1A4Q13733 1029 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF235Q14590 738 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 ZIK1Q3SY52 487 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SETMARQ53H47 684 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 ZC3H12BQ5HYM0 836 aaKnown RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SULT1C3Q6IMI6 304 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CRTC3Q6UUV7 619 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CHST15Q7LFX5 561 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 IGFN1Q86VF2 1251 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 PNPLA1Q8N8W4 532 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CHDHQ8NE62 594 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 ABHD11Q8NFV4 315 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 OR2T11Q8NH01 316 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 NPLOC4Q8TAT6 608 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SLC22A17Q8WUG5 538 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF566Q969W8 418 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 FKBP10Q96AY3 582 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SLC10A4Q96EP9 437 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 RETREG1Q9H6L5 497 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 MAGIXQ9H6Y5 334 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SLAMF8Q9P0V8 285 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 C3orf18Q9UK00 162 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 PCDHGB1Q9Y5G3 927 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 TNPO3Q9Y5L0 923 aaKnown RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 UBA6A0AVT1 1052 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 BTN3A1O00481 513 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF623O75123 536 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 DDNO94850 711 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 KCNH1O95259 989 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ALDH2P05091 517 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 IL1RNP18510 177 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 RYKP34925 604 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF140P52738 457 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 PPP2R2BQ00005 443 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ECT2LQ008S8 904 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 TRIM32Q13049 653 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ITGADQ13349 1161 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 OXA1LQ15070 435 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 FAM219BQ5XKK7 198 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 SLC2A7Q6PXP3 512 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 NECAB2Q7Z6G3 386 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 GPSM1Q86YR5 675 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 FAM126BQ8IXS8 530 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 CARNMT1Q8N4J0 409 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 OR13C4Q8NGS5 318 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 DNAJB8Q8NHS0 232 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 SH3YL1Q96HL8 342 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 SUSD3Q96L08 255 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 AP5M1Q9H0R1 490 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 NUDT4Q9NZJ9 180 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF225Q9UK10 706 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 BAG5Q9UL15 447 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 MED16Q9Y2X0 877 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 SH3BP1Q9Y3L3 701 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ARIH1Q9Y4X5 557 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 CORINQ9Y5Q5 1042 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 NPEPPSL1A6NEC2 478 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 TTC36A6NLP5 189 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 J3QRK9 145 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 SLC22A1O15245 554 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 MT-ND1P03886 318 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 FMO4P31512 558 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 RPS3AP61247 264 aaKnown RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ACOX1Q15067 660 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 TAF1AQ15573 450 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ALFQ53S48 1182 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 RNF165Q6ZSG1 346 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ADHFE1Q8IWW8 467 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 TMCO5AQ8N6Q1 288 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 FBXL8Q96CD0 374 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF641Q96N77 438 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 CSF3RQ99062 836 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 ZBTB18Q99592 522 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 FUNDC2Q9BWH2 189 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 OLA1Q9NTK5 396 aaKnown RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 WARS2Q9UGM6 360 aaKnown RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 TRMT6Q9UJA5 497 aaKnown RBP16.07■□□□□ 0.16
SHMT2-231ENST00000557433 NLRC5Q86WI3 1866 aa16.07■□□□□ 0.16
SHMT2-231ENST00000557433 CDC7O00311 574 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 E2F3O00716 465 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 GSTA4O15217 222 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 GPR182O15218 404 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 KPNA6O60684 536 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 UGT2B11O75310 529 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 BCAS1O75363 584 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PKMP14618 531 aaKnown RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 NFKBIAP25963 317 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 BRCC3P46736 316 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 SERPINB10P48595 397 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CLCN4P51793 760 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 AFF1P51825 1210 aaKnown RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 IL2P60568 153 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 GNA12Q03113 381 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 MAD2L1Q13257 205 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 TUSC3Q13454 348 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 TRIP4Q15650 581 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FAM110CQ1W6H9 321 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 UGT3A1Q6NUS8 523 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CYP20A1Q6UW02 462 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CD300LGQ6UXG3 332 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms