RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ADGRF4Q8IZF3 695 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 LINC00116Q8NCU8 138 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TRMT61AQ96FX7 289 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TRNT1Q96Q11 434 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 ESRP2Q9H6T0 727 aaKnown RBP13.67□□□□□ -0.22
SHMT2-226ENST00000556825 NMUR1Q9HB89 426 aa13.67□□□□□ -0.22
SHMT2-226ENST00000556825 TPP1O14773 563 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 DSCR3O14972 297 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 HRO43593 1189 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 GNRH1P01148 92 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ALDOAP04075 364 aaKnown RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 MPSTP25325 297 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PSMB9P28065 219 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 NUP62P37198 522 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CSKP41240 450 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 MAP2K4P45985 399 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CYP2J2P51589 502 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PRELPP51888 382 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 SLC7A2P52569 658 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ARSFP54793 590 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PPP3CAQ08209 521 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 LGALS3BPQ08380 585 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 IRF3Q14653 427 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 TUSC1Q2TAM9 212 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 HSD17B12Q53GQ0 312 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 RRM2BQ7LG56 351 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 VWA5B2Q8N398 1253 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PAPD5Q8NDF8 572 aaKnown RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 RAD51AP1Q96B01 352 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 TEPSINQ96N21 525 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 LINC00052Q96N35 136 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PPIL3Q9H2H8 161 aaKnown RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 TNKS2Q9H2K2 1166 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 GSN-AS1Q9NRJ2 163 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 BAIAP2Q9UQB8 552 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PIPSLA2A3N6 862 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 MROH6A6NGR9 719 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 SLCO1B7G3V0H7 640 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CD36P16671 472 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CD6P30203 668 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CDKN2BP42772 138 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 BPIFB3P59826 476 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CYP4F8P98187 520 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 DAG1Q14118 895 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 KLHL12Q53G59 568 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 MACC1Q6ZN28 852 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ENOSF1Q7L5Y1 443 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 PLD5Q8N7P1 536 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 GDPD1Q8N9F7 314 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ACTL9Q8TC94 416 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 C11orf24Q96F05 449 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 CDCA5Q96FF9 252 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 GMLQ99445 158 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ZCCHC4Q9H5U6 513 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 RSAD1Q9HA92 442 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ZBTB20Q9HC78 741 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-226ENST00000556825 FAM118AQ9NWS6 357 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 ERVK13-1Q9NX77 482 aa13.66□□□□□ -0.22
SHMT2-226ENST00000556825 BTAF1O14981 1849 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ARAP2Q8WZ64 1704 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 A0A0B4J293 547 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 A0A0U1RQS6 177 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 E2F8A0AVK6 867 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 SYN1P17600 705 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ADRA2BP18089 450 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 FSHRP23945 695 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 TGFBR2P37173 567 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 GCLMP48507 274 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 DGCR6Q14129 220 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 GRIK4Q16099 956 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 OTUD3Q5T2D3 398 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-226ENST00000556825 LIN9Q5TKA1 542 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 LRRC38Q5VT99 294 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 GLYATQ6IB77 296 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 CASC4Q6P4E1 433 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 KRT73Q86Y46 540 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 TRIM48Q8IWZ4 208 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ADGRG2Q8IZP9 1017 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 RBFAQ8N0V3 343 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ATG16L2Q8NAA4 619 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 AGBL3Q8NEM8 1001 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 DEPDC1BQ8WUY9 529 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ZNF566Q969W8 418 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 RNF31Q96EP0 1072 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 ZNF668Q96K58 619 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-226ENST00000556825 RDH12Q96NR8 316 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 NT5C1BQ96P26 610 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 TSGA13Q96PP4 275 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 SLC22A4Q9H015 551 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 GPRC5CQ9NQ84 441 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 CATSPERZQ9NTU4 200 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 EDARQ9UNE0 448 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 BCS1LQ9Y276 419 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 MAST2Q6P0Q8 1798 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 TAF1LQ8IZX4 1826 aa13.65□□□□□ -0.22
SHMT2-226ENST00000556825 PLIN4Q96Q06 1357 aa13.65□□□□□ -0.23
SHMT2-226ENST00000556825 KPNA7A9QM74 516 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 MRASO14807 208 aa13.64□□□□□ -0.23
SHMT2-226ENST00000556825 CHADO15335 359 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms