RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ARRDC2Q8TBH0 407 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 NSMCE1Q8WV22 266 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 ZNF653Q96CK0 615 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 LRFN5Q96NI6 719 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 CSPG4P5Q96PW8 444 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 TIMM29Q9BSF4 260 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 TLR10Q9BXR5 811 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 POLR1EQ9GZS1 481 aaKnown RBP12.62□□□□□ -0.39
VPS29-211ENST00000553128 ZWILCHQ9H900 591 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 PCDH9Q9HC56 1237 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 PCMTD2Q9NV79 361 aa12.62□□□□□ -0.39
VPS29-211ENST00000553128 MDC1Q14676 2089 aaKnown RBP12.61□□□□□ -0.39
VPS29-211ENST00000553128 UBA6A0AVT1 1052 aaPredicted RBP12.61□□□□□ -0.39
VPS29-211ENST00000553128 TLCD2A6NGC4 264 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 TMCO5BA8MYB1 307 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 SNRPB2P08579 225 aaKnown RBP12.61□□□□□ -0.39
VPS29-211ENST00000553128 IDSP22304 550 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 ARCN1P48444 511 aaKnown RBP12.61□□□□□ -0.39
VPS29-211ENST00000553128 PER3P56645 1201 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 FOXL2P58012 376 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 MYBPC3Q14896 1274 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 DPCR1Q3MIW9 517 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 ANKRD20A8PQ5CZ79 823 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 ZNF789Q5FWF6 425 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 TCP11X2Q5H9J9 407 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 TXNRD3NBQ6F5E7 133 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 ALG1LQ6GMV1 187 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 WASH2PQ6VEQ5 465 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 MRGPREQ86SM8 312 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 KMT5CQ86Y97 462 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 SYTL1Q8IYJ3 562 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 GALNT16Q8N428 558 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 GLYATL1Q969I3 302 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 CLIP3Q96DZ5 547 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 COPG2Q9UBF2 871 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 TMPRSS11EQ9UL52 423 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 DNPEPQ9ULA0 475 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 PSMD13Q9UNM6 376 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 TTLL3Q9Y4R7 772 aa12.61□□□□□ -0.39
VPS29-211ENST00000553128 MED13LQ71F56 2210 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 OR5K3A6NET4 321 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 TMEM191CA6NGB0 347 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 H3BRJ5 948 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 DIAPH2O60879 1101 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 KLF7O75840 302 aaPredicted RBP12.6□□□□□ -0.39
VPS29-211ENST00000553128 PIRTP0C851 137 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 SPTBP11277 2137 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 DESP17661 470 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 ITGA3P26006 1051 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 KPNA2P52292 529 aaKnown RBP12.6□□□□□ -0.39
VPS29-211ENST00000553128 NCF4Q15080 339 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 SYCP1Q15431 976 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 RPE65Q16518 533 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 DPYSL2Q16555 572 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 DCAF10Q5QP82 559 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 PLEKHA7Q6IQ23 1121 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 FAM83HQ6ZRV2 1179 aaPredicted RBP12.6□□□□□ -0.39
VPS29-211ENST00000553128 PSTKQ8IV42 348 aaKnown RBP12.6□□□□□ -0.39
VPS29-211ENST00000553128 OR1L3Q8NH93 324 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 GRHL3Q8TE85 626 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 CPT1BQ92523 772 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 HSPH1Q92598 858 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 POM121Q96HA1 1249 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 LATS2Q9NRM7 1088 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 AGPAT4Q9NRZ5 378 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 HRASLS2Q9NWW9 162 aa12.6□□□□□ -0.39
VPS29-211ENST00000553128 CFAP20Q9Y6A4 193 aaKnown RBP12.6□□□□□ -0.39
VPS29-211ENST00000553128 HEATR9A2RTY3 570 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 RGSL1A5PLK6 1076 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 GPR89AB7ZAQ6 455 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 RNF8O76064 485 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 CDK14O94921 469 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ZBTB11O95625 1053 aaPredicted RBP12.59□□□□□ -0.39
VPS29-211ENST00000553128 SLC4A1P02730 911 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 HLA-DQB2P05538 268 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 MMP2P08253 660 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 GPR89BP0CG08 455 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ATXN8OSP0DMR3 200 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ARL4AP40617 200 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ZNF135P52742 658 aaPredicted RBP12.59□□□□□ -0.39
VPS29-211ENST00000553128 GALNT3Q14435 633 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 PLCL1Q15111 1095 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 TESK1Q15569 626 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 HIF1AQ16665 826 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 DUS1LQ6P1R4 473 aaKnown RBP12.59□□□□□ -0.39
VPS29-211ENST00000553128 GDF7Q7Z4P5 450 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 RAB43Q86YS6 212 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ZADH2Q8N4Q0 377 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 TRAM1L1Q8N609 369 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 OR8K5Q8NH50 307 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 CCHCR1Q8TD31 782 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 MAML1Q92585 1016 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 CD180Q99467 661 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 NUP85Q9BW27 656 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 ACTR5Q9H9F9 607 aaPredicted RBP12.59□□□□□ -0.39
VPS29-211ENST00000553128 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS29-211ENST00000553128 PARVAQ9NVD7 372 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 RBM22Q9NW64 420 aaKnown RBP eCLIP12.59□□□□□ -0.392e-8■□□□□ 9.5
VPS29-211ENST00000553128 SOHLH2Q9NX45 425 aa12.59□□□□□ -0.39
VPS29-211ENST00000553128 NOVA2Q9UNW9 492 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms