RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZNF451Q9Y4E5 1061 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 PCM1Q15154 2024 aa17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 MDC1Q14676 2089 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-214ENST00000542663 SEC16AO15027 2179 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 TLCD2A6NGC4 264 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 SCRG1O75711 98 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 MX2P20592 715 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 TAS2R40P59535 323 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 PPIDQ08752 370 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 TMEM115Q12893 351 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 GPR19Q15760 415 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 RPE65Q16518 533 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 HADHQ16836 314 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 ATP13A5Q4VNC0 1218 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 FAM69BQ5VUD6 431 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 MAMDC2Q7Z304 686 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 KMT5CQ86Y97 462 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 RBMXL3Q8N7X1 1067 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 KCTD6Q8NC69 237 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 FDCSPQ8NFU4 85 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 PRR7Q8TB68 274 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 MR1Q95460 341 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 TADA1Q96BN2 335 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 ZNF501Q96CX3 271 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 IMP4Q96G21 291 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 MFRPQ9BY79 579 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 GPR63Q9BZJ6 419 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 CHST8Q9H2A9 424 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 ERRFI1Q9UJM3 462 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 PSMD13Q9UNM6 376 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 PCDHGB7Q9Y5F8 929 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 SPO11Q9Y5K1 396 aa17.42■□□□□ 0.38
CLSTN3-214ENST00000542663 MYO1FO00160 1098 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 DPM1O60762 260 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 HALP42357 657 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 TUBB4BP68371 445 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 HSD11B2P80365 405 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 PDE1BQ01064 536 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 DMPKQ09013 629 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 TUBB2AQ13885 445 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 PDK2Q15119 407 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 PCSK7Q16549 785 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 SLC6A19Q695T7 634 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 FAM83HQ6ZRV2 1179 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 CLEC17AQ6ZS10 378 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 TMEM126BQ8IUX1 230 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 TUBB2BQ9BVA1 445 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 BPIFA1Q9NP55 256 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 CROCCQ5TZA2 2017 aa17.41■□□□□ 0.38
CLSTN3-214ENST00000542663 ANKRD12Q6UB98 2062 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 OR5K3A6NET4 321 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 TMEM63AO94886 807 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 LDLRP01130 860 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 VCLP18206 1134 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 CA5AP35218 305 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 CTSCP53634 463 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 ITGA1P56199 1179 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 CDK18Q07002 472 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 DNTTIP2Q5QJE6 756 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 PLEKHS1Q5SXH7 462 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 PRAMEF17Q5VTA0 474 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 KLHL35Q6PF15 583 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 NT5DC3Q86UY8 548 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 PLD5Q8N7P1 536 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 ENDOVQ8N8Q3 282 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 PNPLA2Q96AD5 504 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 C19orf60Q96EN9 201 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 NAP1L5Q96NT1 182 aaPredicted RBP17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 CD180Q99467 661 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 SLAMF7Q9NQ25 335 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 KCND1Q9NSA2 647 aa17.4■□□□□ 0.38
CLSTN3-214ENST00000542663 A0A087X0T9 212 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 SSU72P8A0A1W2PR75 194 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 UBA6A0AVT1 1052 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 ZNF185O15231 689 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 GPR39O43194 453 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 KRT86O43790 486 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 KCNJ13O60928 360 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 MT-CYBP00156 380 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 CAPN1P07384 714 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 FAM228BP0C875 321 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 ARL4DP49703 201 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 PLCL1Q15111 1095 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 AMZ2Q86W34 360 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 DSELQ8IZU8 1212 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 RASGEF1AQ8N9B8 481 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 SPATA22Q8NHS9 363 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 PPM1MQ96MI6 270 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 LRFN5Q96NI6 719 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 RNF157Q96PX1 679 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 SLC29A3Q9BZD2 475 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 LATS2Q9NRM7 1088 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 HRASLS2Q9NWW9 162 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 TCFL5Q9UL49 500 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 ABCA12Q86UK0 2595 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 DOCK10Q96BY6 2186 aa17.39■□□□□ 0.37
CLSTN3-214ENST00000542663 SNRNP200O75643 2136 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 A0A1B0GTH6 734 aa17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 POP7O75817 140 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-214ENST00000542663 ZBTB11O95625 1053 aaPredicted RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms