RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 ARL13AQ5H913 290 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 GPR153Q6NV75 609 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF529Q6P280 563 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 NPNTQ6UXI9 565 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 GPRIN3Q6ZVF9 776 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZDHHC21Q8IVQ6 265 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 SPATA6LQ8N4H0 392 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 PEX13Q92968 403 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 TMBIM1Q969X1 311 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 ZNF436Q9C0F3 470 aaPredicted RBP8.68□□□□□ -1.02
YBX3-208ENST00000540447 GBA3Q9H227 469 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CDH7Q9ULB5 785 aa8.68□□□□□ -1.02
YBX3-208ENST00000540447 CUL7Q14999 1698 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 F8VP50 259 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CSDE1O75534 798 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 PNPP00491 289 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 PTGIRP43119 386 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MYL6P60660 151 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NKX1-1Q15270 411 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 TMEM179Q6ZVK1 233 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 UNC5BQ8IZJ1 945 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 PHTF2Q8N3S3 785 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 FTMTQ8N4E7 242 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 OR52K1Q8NGK4 314 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SELENOMQ8WWX9 145 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 AURKBQ96GD4 344 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 C3orf14Q9HBI5 128 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 PCDHB8Q9UN66 801 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ERVV-2B6SEH9 535 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CSN2P05814 226 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CERS1P27544 350 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CSTF2P33240 577 aaKnown RBP eCLIP8.67□□□□□ -1.02
YBX3-208ENST00000540447 SLC12A3P55017 1021 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 POU4F2Q12837 409 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NTRK3Q16288 839 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SETMARQ53H47 684 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 EARS2Q5JPH6 523 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 TRAPPC3LQ5T215 181 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NEPROQ6NW34 567 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 UGT2A3Q6UWM9 527 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 Q6ZNX1 250 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 DET1Q7L5Y6 550 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 RAB11FIP2Q7L804 512 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 COMTD1Q86VU5 262 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 FAM131BQ86XD5 332 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 RNF149Q8NC42 400 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CHPT1Q8WUD6 406 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SERAC1Q96JX3 654 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MRPL45Q9BRJ2 306 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 ADAMTS10Q9H324 1103 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 JPH1Q9HDC5 661 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 IFT46Q9NQC8 304 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 DDIT4Q9NX09 232 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.67□□□□□ -1.02
YBX3-208ENST00000540447 CRYL1Q9Y2S2 319 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ANKRD63C9JTQ0 380 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MTHFD1P11586 935 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 PHKG2P15735 406 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 POLR2CP19387 275 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 ORC1Q13415 861 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 LRRC38Q5VT99 294 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MOXD1Q6UVY6 613 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 Q8N9G6 341 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 POMGNT2Q8NAT1 580 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SLAIN1Q8ND83 568 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ST8SIA2Q92186 375 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 DDX1Q92499 740 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 TMIGD2Q96BF3 282 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 LGALS12Q96DT0 336 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 C11orf16Q9NQ32 467 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NANSQ9NR45 359 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 AHSPQ9NZD4 102 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 IGSF9BQ9UPX0 1349 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CDK12Q9NYV4 1490 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 HMX3A6NHT5 357 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ANKDD1BA6NHY2 528 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 F5H0A9 414 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 HLA-DQA2P01906 255 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 GIMD1P0DJR0 217 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SLC6A2P23975 617 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 S100PP25815 95 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MIPP30301 263 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 RYKP34925 604 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 HNF1BP35680 557 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MECP2P51608 486 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 CLCN5P51795 746 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ZNF135P52742 658 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 ERVFC1P60507 584 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 TXNL4AP83876 142 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 GALK2Q01415 458 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 PMS2P3Q13401 168 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CAMK2GQ13555 558 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 TIGD3Q6B0B8 471 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CHST15Q7LFX5 561 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 OTOP3Q7RTS5 596 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 APTXQ7Z2E3 356 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 OAFQ86UD1 273 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SLC9A9Q8IVB4 645 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CNTNAP3BQ96NU0 1288 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ALPK1Q96QP1 1244 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms