RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 KPNA5O15131 536 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 NDUFS2O75306 463 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 SPAG7O75391 227 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CDK14O94921 469 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 FSBPO95073 299 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CD46P15529 392 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CHRM3P20309 590 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CCT5P48643 541 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 PXNP49023 591 aaPredicted RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CLCN7P51798 805 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 PFN3P60673 137 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 TCF15Q12870 199 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 ZNF460Q14592 562 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 TTLL9Q3SXZ7 439 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 GCNT7Q6ZNI0 430 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 TRIM74Q86UV6 250 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 CENPLQ8N0S6 344 aaPredicted RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 NKAPQ8N5F7 415 aaKnown RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 RASGEF1AQ8N9B8 481 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 GIMAP7Q8NHV1 300 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 LKAAEAR1Q8TD35 194 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 RLN3Q8WXF3 142 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 FOXJ1Q92949 421 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 FUBP1Q96AE4 644 aaKnown RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 BIRC7Q96CA5 298 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 UBXN10Q96LJ8 280 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 LINC00615Q96LM1 132 aaPredicted RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 APOOQ9BUR5 198 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 RMI1Q9H9A7 625 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 FZD3Q9NPG1 666 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 SPATS2LQ9NUQ6 558 aaKnown RBP12.87□□□□□ -0.35
CPNE3-205ENST00000522240 NKIRAS1Q9NYS0 192 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 ATXN10Q9UBB4 475 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 GRID1Q9ULK0 1009 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 GPR34Q9UPC5 381 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 HS3ST3A1Q9Y663 406 aa12.87□□□□□ -0.35
CPNE3-205ENST00000522240 PIKFYVEQ9Y2I7 2098 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 A0A1W2PPC4 97 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 KLHL33A6NCF5 533 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 A6NNZ2 444 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 METTL12A8MUP2 240 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CHUKO15111 745 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 LILRB5O75023 590 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 KLHL2O95198 593 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 LTA4HP09960 611 aaKnown RBP12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CBSLP0DN79 551 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 ENO3P13929 434 aaPredicted RBP12.86□□□□□ -0.35
CPNE3-205ENST00000522240 KELP23276 732 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CBSP35520 551 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 RGS4P49798 205 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CTSCP53634 463 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 YPEL5P62699 121 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 IRF9Q00978 393 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 GBX1Q14549 363 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 NFATC4Q14934 902 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 FAM83EQ2M2I3 478 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CCDC153Q494R4 210 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 PPM1JQ5JR12 505 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 PLEKHS1Q5SXH7 462 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 AGAP9Q5VTM2 703 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 LRRC8EQ6NSJ5 796 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 CDHR3Q6ZTQ4 885 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 DET1Q7L5Y6 550 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 ABI3BPQ7Z7G0 1075 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 C11orf74Q86VG3 221 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 C1orf210Q8IVY1 113 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 FAM160A2Q8N612 972 aaPredicted RBP12.86□□□□□ -0.35
CPNE3-205ENST00000522240 SIDT2Q8NBJ9 832 aaKnown RBP12.86□□□□□ -0.35
CPNE3-205ENST00000522240 TCP10LQ8TDR4 215 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 KCTD4Q8WVF5 259 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 INPP5DQ92835 1189 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 SLC13A1Q9BZW2 595 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 OR2AG1Q9H205 316 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 KCNK9Q9NPC2 374 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 MBD1Q9UIS9 605 aaPredicted RBP12.86□□□□□ -0.35
CPNE3-205ENST00000522240 MID2Q9UJV3 735 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 FBXO4Q9UKT5 387 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 SLC17A4Q9Y2C5 497 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 OR1A2Q9Y585 309 aa12.86□□□□□ -0.35
CPNE3-205ENST00000522240 OR2AG2A6NM03 316 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 IQCF5A8MTL0 148 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 NUAK1O60285 661 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 TRIM16O95361 564 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 ASMTLO95671 621 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 APOA4P06727 396 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 CCDC166P0CW27 439 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 ZNF8P17098 575 aaPredicted RBP12.85□□□□□ -0.35
CPNE3-205ENST00000522240 CD27P26842 260 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 AOAHP28039 575 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 AVPR2P30518 371 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 RPA3P35244 121 aaPredicted RBP12.85□□□□□ -0.35
CPNE3-205ENST00000522240 RABIFP47224 123 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 ATP6V0D1P61421 351 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 RPL6Q02878 288 aaKnown RBP12.85□□□□□ -0.35
CPNE3-205ENST00000522240 ZNF648Q5T619 568 aaPredicted RBP12.85□□□□□ -0.35
CPNE3-205ENST00000522240 KLC3Q6P597 504 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 PAQR3Q6TCH7 311 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 TMEM207Q6UWW9 146 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 OTOAQ7RTW8 1153 aa12.85□□□□□ -0.35
CPNE3-205ENST00000522240 LRRTM4Q86VH4 590 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms