RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 DDX56Q9NY93 547 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 DTLQ9NZJ0 730 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GULP1Q9UBP9 304 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 SCOCQ9UIL1 159 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 GPR34Q9UPC5 381 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 LRCH1Q9Y2L9 728 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 ARL2BPQ9Y2Y0 163 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 UTP11Q9Y3A2 253 aaKnown RBP7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PCDHB1Q9Y5F3 818 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 PCDHGA8Q9Y5G5 932 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 LRP4O75096 1905 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 RP1P56715 2156 aa7.97□□□□□ -1.13
SCN1A-207ENST00000507401 A0A0A6YYK5 440 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 A0A0U1RQJ8 604 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 C3orf70A6NLC5 250 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ANKRD66B4E2M5 251 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ZNF185O15231 689 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ZW10O43264 779 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 TLX3O43711 291 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 NUDT21O43809 227 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 DIAPH2O60879 1101 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PRLP01236 227 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 JCHAINP01591 159 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 FUCA1P04066 466 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CELA2BP08218 269 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CALB2P22676 271 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 MSH2P43246 934 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CDK3Q00526 305 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 EIF3IQ13347 325 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 DHX34Q14147 1143 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 SPIDRQ14159 915 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 IHHQ14623 411 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PDK1Q15118 436 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 RPS6KA1Q15418 735 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 TAZQ16635 292 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CLPPQ16740 277 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 KRT71Q3SY84 523 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CERCAMQ5T4B2 595 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ADAMTSL4Q6UY14 1074 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 TAF8Q7Z7C8 310 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PDZD3Q86UT5 571 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 LCA5Q86VQ0 697 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 HEATR4Q86WZ0 1026 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 C17orf82Q86X59 251 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CPNE8Q86YQ8 564 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ALDH16A1Q8IZ83 802 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PLD5Q8N7P1 536 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CCNYQ8ND76 341 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ZNF248Q8NDW4 579 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 FAM46DQ8NEK8 389 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 EXD1Q8NHP7 514 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 WDR36Q8NI36 951 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 AGAP11Q8TF27 550 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 GTPBP3Q969Y2 492 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 AP2M1Q96CW1 435 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 THOC1Q96FV9 657 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PDXPQ96GD0 296 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 HIC2Q96JB3 615 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ZNF570Q96NI8 536 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 SLC46A1Q96NT5 459 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 NR1H4Q96RI1 486 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ADGRE3Q9BY15 652 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 FRMD8Q9BZ67 464 aaPredicted RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 TMEM168Q9H0V1 697 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ABCG8Q9H221 673 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PCDH9Q9HC56 1237 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CYP4F12Q9HCS2 524 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 MRPL40Q9NQ50 206 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 INTS9Q9NV88 658 aaKnown RBP7.96□□□□□ -1.14
SCN1A-207ENST00000507401 IRAK4Q9NWZ3 460 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 STOML1Q9UBI4 398 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 SLC17A4Q9Y2C5 497 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PCDHGA11Q9Y5H2 935 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 ENTPD2Q9Y5L3 495 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 CELSR3Q9NYQ7 3312 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 IGSF10Q6WRI0 2623 aa7.96□□□□□ -1.14
SCN1A-207ENST00000507401 PRSS38A1L453 326 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 CAPN8A6NHC0 703 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 TMEM229AB2RXF0 380 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 APOL1O14791 398 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 NOBOXO60393 691 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 SNX3O60493 162 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 SOD1P00441 154 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 MPOP05164 745 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 HLA-DQB2P05538 268 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 CTPS1P17812 591 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 RBMS1P29558 406 aaKnown RBP7.95□□□□□ -1.14
SCN1A-207ENST00000507401 GJC1P36383 396 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 PEX19P40855 299 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 ABCG1P45844 678 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 GPR1P46091 355 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 STC1P52823 247 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 EPHB1P54762 984 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 GDF10P55107 478 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 PCBP4P57723 403 aaKnown RBP7.95□□□□□ -1.14
SCN1A-207ENST00000507401 MAGOHP61326 146 aaKnown RBP7.95□□□□□ -1.14
SCN1A-207ENST00000507401 GABREP78334 506 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 OCRLQ01968 901 aa7.95□□□□□ -1.14
SCN1A-207ENST00000507401 DSC2Q02487 901 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms