RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 HACD3Q9P035 362 aa11.32□□□□□ -0.6
HMGCS1-204ENST00000507293 IL17CQ9P0M4 197 aa11.32□□□□□ -0.6
HMGCS1-204ENST00000507293 RSPH14Q9UHP6 348 aa11.32□□□□□ -0.6
HMGCS1-204ENST00000507293 PSMD13Q9UNM6 376 aa11.32□□□□□ -0.6
HMGCS1-204ENST00000507293 hCG_1818297A0A087WSY0 165 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 OR2AG2A6NM03 316 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 GAPDHSO14556 408 aaPredicted RBP11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 KCNJ13O60928 360 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 POP7O75817 140 aaKnown RBP11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 EPOP01588 193 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 FGF5P12034 268 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 HLA-DPA1P20036 260 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 MARCKSL1P49006 195 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 DMPKQ09013 629 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 MPP3Q13368 585 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 NFE2L1Q14494 772 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 SLC1A5Q15758 541 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 RPE65Q16518 533 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 CRTC2Q53ET0 693 aaPredicted RBP11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 TFDP3Q5H9I0 405 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 LDLRAP1Q5SW96 308 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 GPRC6AQ5T6X5 926 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 FAM83HQ6ZRV2 1179 aaPredicted RBP11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 CNGA4Q8IV77 575 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 CCDC50Q8IVM0 306 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 KATNAL2Q8IYT4 538 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 RNF214Q8ND24 703 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 DDHD1Q8NEL9 900 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 DTX3LQ8TDB6 740 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 APOBEC4Q8WW27 367 aaKnown RBP11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 VAT1Q99536 393 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 FSD1LQ9BXM9 530 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 RAB33BQ9H082 229 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 TSPY26PQ9H489 355 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 EPHA6Q9UF33 1036 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 LNPEPQ9UIQ6 1025 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 PKP3Q9Y446 797 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 ALG6Q9Y672 507 aa11.31□□□□□ -0.6
HMGCS1-204ENST00000507293 IGHV5-51A0A0C4DH38 117 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 GOLGA6L3A6NEY3 463 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 HACD1B0YJ81 288 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 AKR1B15C9JRZ8 316 aaPredicted RBP11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 KATNA1O75449 491 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 SPAG6O75602 509 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 NELFEP18615 380 aaKnown RBP11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 FECHP22830 423 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 AKT1P31749 480 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 CASRP41180 1078 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 MAGEA1P43355 309 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 HADHBP55084 474 aaKnown RBP11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 ITGA9Q13797 1035 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 SEPT6Q14141 434 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 ERV3-1Q14264 604 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 PTPRCAPQ14761 206 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 PLCL1Q15111 1095 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 LACTB2Q53H82 288 aaPredicted RBP11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 TMEM220Q6QAJ8 160 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 DET1Q7L5Y6 550 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 PPP1R3BQ86XI6 285 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 RCOR2Q8IZ40 523 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 COL26A1Q96A83 441 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 ABHD17AQ96GS6 310 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 FICDQ9BVA6 458 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 C10orf88Q9H8K7 445 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 IMP3Q9NV31 184 aaKnown RBP11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 SMOXQ9NWM0 555 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.3□□□□□ -0.63e-10■■□□□ 12.8
HMGCS1-204ENST00000507293 ANAPC2Q9UJX6 822 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 TFR2Q9UP52 801 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 KCTD3Q9Y597 815 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 PCDHB3Q9Y5E6 796 aa11.3□□□□□ -0.6
HMGCS1-204ENST00000507293 TNRC6AQ8NDV7 1962 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 BOD1L1Q8NFC6 3051 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 H7C0C1 242 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 STX7O15400 261 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 ZRANB2O95218 330 aaKnown RBP eCLIP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TIAF1O95411 115 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 PRAMEF1O95521 474 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 AGTP01019 485 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 FURINP09958 794 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 MTHFD1P11586 935 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 MSH3P20585 1137 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 ATP5OP48047 213 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 GEMP55040 296 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TBX2Q13207 712 aaPredicted RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 XRCC4Q13426 336 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TUBB3Q13509 450 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 DNASE1L3Q13609 305 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 KCNAB1Q14722 419 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 COLEC12Q5KU26 742 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 FNBP1LQ5T0N5 605 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 DUS1LQ6P1R4 473 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 CYB5D1Q6P9G0 228 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 BBS12Q6ZW61 710 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 TMEM135Q86UB9 458 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 BEND7Q8N7W2 519 aaPredicted RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 SIDT2Q8NBJ9 832 aaKnown RBP11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 CT55Q8WUE5 264 aa11.29□□□□□ -0.6
HMGCS1-204ENST00000507293 UBXN4Q92575 508 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms