RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ILVBLA1L0T0 632 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HDAC3O15379 428 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LZTS3O60299 673 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OR1I1O60431 355 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLTBP09497 229 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LTA4HP09960 611 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HIST1H2AGP0C0S8 130 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PABPC1P11940 636 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HIST1H2ADP20671 130 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GRIA2P42262 883 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PPP3CCP48454 512 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NR6A1Q15406 480 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CEP97Q8IW35 865 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 YAF2Q8IY57 180 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SIDT2Q8NBJ9 832 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF784Q8NCA9 323 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ELMO1Q92556 727 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CENPIQ92674 756 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FUBP3Q96I24 572 aaKnown RBP eCLIP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HIST1H2AHQ96KK5 128 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RNF145Q96MT1 663 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HIST1H2AJQ99878 128 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 H2AFJQ9BTM1 129 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 WRAP53Q9BUR4 548 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ADI1Q9BV57 179 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GREB1LQ9C091 1923 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ERVK-11Q9UQG0 969 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PMF1-BGLAPU3KQ54 211 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL1BP01584 269 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MT-ND1P03886 318 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MPOP05164 745 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NAT1P18440 290 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ITGALP20701 1170 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IDH3AP50213 366 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NKX2-5P52952 324 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LBX1P52954 281 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKAA2P54646 552 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TIGD2Q4W5G0 525 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AARS2Q5JTZ9 985 aaKnown RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TSTD2Q5T7W7 516 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL23RQ5VWK5 629 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GK5Q6ZS86 529 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PHTF2Q8N3S3 785 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 METTL6Q8TCB7 284 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LINGO1Q96FE5 620 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKD2Q9BZL6 878 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TPK1Q9H3S4 243 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SCML2Q9UQR0 700 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MTF2Q9Y483 593 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FER1L6Q2WGJ9 1857 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KANSL1LA0AUZ9 987 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 STX16-NPEPL1H3BU86 382 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SERPINB7O75635 380 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FGF18O76093 207 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FGBP02675 491 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ADH1AP07327 375 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TSHRP16473 764 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CHRNB3Q05901 458 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 STARD3Q14849 445 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CPSF6Q16630 551 aaKnown RBP eCLIP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AP5B1Q2VPB7 878 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARHGAP15Q53QZ3 475 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OTUD1Q5VV17 481 aaPredicted RBP10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM171BQ6P995 826 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PGAM4Q8N0Y7 254 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RAB2BQ8WUD1 216 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC45A3Q96JT2 553 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CEP295NLQ96MC4 621 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KIF17Q9P2E2 1029 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PTGDR2Q9Y5Y4 395 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TET1Q8NFU7 2136 aa10.63□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TRAV19A0A0A6YYK7 116 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GRXCR1A8MXD5 290 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AREL1O15033 823 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CAPN15O75808 1086 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PCDH8O95206 1070 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 APOA4P06727 396 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MLNP12872 115 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EFNA1P20827 205 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PTGS2P35354 604 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 YAP1P46937 504 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ARMCX4Q5H9R4 360 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FBXL19Q6PCT2 694 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ELMSAN1Q6PJG2 1045 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PAQR3Q6TCH7 311 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 P3H2Q8IVL5 708 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BBS7Q8IWZ6 715 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 C8orf59Q8N0T1 100 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ANKLE1Q8NAG6 615 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SH3RF2Q8TEC5 729 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PYCR2Q96C36 320 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MYEOVQ96EZ4 313 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MRGPRX2Q96LB1 330 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC39A3Q9BRY0 314 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HGH1Q9BTY7 390 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVM2 712 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TCAF2A6NFQ2 919 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TMEM114B3SHH9 223 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 E7ENX8 843 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms