RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 INTS10Q9NVR2 710 aaKnown RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TMEM45AQ9NWC5 275 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 DPP3Q9NY33 737 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CYP39A1Q9NYL5 469 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 NINJ2Q9NZG7 142 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TBC1D7Q9P0N9 293 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 STK26Q9P289 416 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 MTUS1Q9ULD2 1270 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SQORQ9Y6N5 450 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 RNF103-CHMP3A0A140T963 221 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 KRTAP9-6A0A140TA67 174 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 RNF103O00237 685 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SELENOFO60613 162 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF217O75362 1048 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CRCPO75575 148 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ACSL3O95573 720 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ACAT1P24752 427 aaKnown RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SOX10P56693 466 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CSNK2A1P68400 391 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 MVPQ14764 893 aaKnown RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 LSM12Q3MHD2 195 aaKnown RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 DCST1Q5T197 706 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SUMO4Q6EEV6 95 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CASC4Q6P4E1 433 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 SLC36A4Q6YBV0 504 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 PALB2Q86YC2 1186 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 BEST3Q8N1M1 668 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TTC9BQ8N6N2 239 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 EMC1Q8N766 993 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TEX45Q8NA69 505 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 CSNK2A3Q8NEV1 391 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 OR2AJ1Q8NGZ0 328 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 C16orf45Q96MC5 204 aaPredicted RBP4.58□□□□□ -1.68
VPS13A-212ENST00000493341 UROC1Q96N76 676 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 MUS81Q96NY9 551 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TSGA13Q96PP4 275 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 OR6C1Q96RD1 312 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 RUFY1Q96T51 708 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 GFI1Q99684 422 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TIMP4Q99727 224 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 WNT5BQ9H1J7 359 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 KLHL1Q9NR64 748 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 THSD1Q9NS62 852 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 TMEM51Q9NW97 253 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 PADI2Q9Y2J8 665 aa4.58□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF335Q9H4Z2 1342 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 C5orf52A6NGY3 159 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 A6NNC1 897 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 AP5Z1O43299 807 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 RAB40ALP0C0E4 278 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 CHRNB1P11230 501 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 DDX5P17844 614 aaKnown RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 SERPINB6P35237 376 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 RABIFP47224 123 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 KHKP50053 298 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF81P51508 661 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 CASP9P55211 416 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 POLR2LP62875 67 aaKnown RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 GFPT1Q06210 699 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 FOXM1Q08050 763 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 PDK1Q15118 436 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 DCAF6Q58WW2 860 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 TOR1AIP1Q5JTV8 583 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 PIK3CD-AS1Q5SR53 167 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 SLC27A1Q6PCB7 646 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ISLR2Q6UXK2 745 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 MEPCEQ7L2J0 689 aaKnown RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 IRF2BP2Q7Z5L9 587 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ATL1Q8WXF7 558 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ADAMTS14Q8WXS8 1223 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 KLHL5Q96PQ7 755 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 FEVQ99581 238 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 CPNE1Q99829 537 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 OSBPL8Q9BZF1 889 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 KLHL31Q9H511 634 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 LIN28AQ9H9Z2 209 aaKnown RBP4.57□□□□□ -1.68
VPS13A-212ENST00000493341 MMP25Q9NPA2 562 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 MYNNQ9NPC7 610 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ACTR3BQ9P1U1 418 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 SLC17A6Q9P2U8 582 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 GMEB2Q9UKD1 530 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 COG5Q9UP83 839 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 ATP6V0A2Q9Y487 856 aa4.57□□□□□ -1.68
VPS13A-212ENST00000493341 TRBV5-3A0A0A0MS03 114 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 A0A0A6YYC8 382 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 HEPACAM2A8MVW5 462 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 I3L1I5 382 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 PLK4O00444 970 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 NME6O75414 186 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 DANCRP0C864 163 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 EPORP19235 508 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CD27P26842 260 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 TKTP29401 623 aaKnown RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 BDKRB2P30411 391 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 CACNA2D1P54289 1103 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 UBASH3AP57075 661 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 TUBA4AP68366 448 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 UGCGQ16739 394 aa4.56□□□□□ -1.68
VPS13A-212ENST00000493341 LBHQ53QV2 105 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-212ENST00000493341 ZNF793Q6ZN11 406 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms