RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 GPR34Q9UPC5 381 aa8.68□□□□□ -1.02
USP4-213ENST00000488520 CHKBQ9Y259 395 aa8.68□□□□□ -1.02
USP4-213ENST00000488520 COQ6Q9Y2Z9 468 aa8.68□□□□□ -1.02
USP4-213ENST00000488520 PRAMEF33A0A0G2JMD5 474 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 ERI2A8K979 691 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 F5H423 210 aaPredicted RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 PRAMEF10O60809 474 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 TM7SF2O76062 418 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 PIGNO95427 931 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 CPP00450 1065 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 EPOP01588 193 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 LIPCP11150 499 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 GATA4P43694 442 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 RGRP47804 291 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 RPL26P61254 145 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 BASP1P80723 227 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 TLE1Q04724 770 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 NIPAL4Q0D2K0 466 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 GPS1Q13098 491 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 EIF3IQ13347 325 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 DHX34Q14147 1143 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 ELOCQ15369 112 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 SIX1Q15475 284 aaPredicted RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 UGP2Q16851 508 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 ENPP7Q6UWV6 458 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 PPP1R21Q6ZMI0 780 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 MACC1Q6ZN28 852 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 ZNF574Q6ZN55 896 aaPredicted RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 USP45Q70EL2 814 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 DMRTC2Q8IXT2 367 aaPredicted RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 TAB3Q8N5C8 712 aaPredicted RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 ARL10Q8N8L6 244 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 DNAAF3Q8N9W5 541 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 BBOF1Q8ND07 529 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 IPMKQ8NFU5 416 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 SPATA22Q8NHS9 363 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 ARRDC2Q8TBH0 407 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 CXorf40AQ8TE69 158 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 ASB12Q8WXK4 309 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 USP7Q93009 1102 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 TEX15Q9BXT5 2789 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 DDX47Q9H0S4 455 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 LRRN3Q9H3W5 708 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 LRRC40Q9H9A6 602 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 PCYOX1Q9UHG3 505 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 RPL26L1Q9UNX3 145 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 UTP11Q9Y3A2 253 aaKnown RBP8.67□□□□□ -1.02
USP4-213ENST00000488520 LOXL2Q9Y4K0 774 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 PCDHGA7Q9Y5G6 932 aa8.67□□□□□ -1.02
USP4-213ENST00000488520 LRRK2Q5S007 2527 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 SPTBN1Q01082 2364 aaKnown RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 ANKRD66B4E2M5 251 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TMX2-CTNND1H3BSU7 103 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 J3QW42 95 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 PPFIA2O75334 1257 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 PGLSO95336 258 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 MT-CYBP00156 380 aaPredicted RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 RPLP1P05386 114 aaKnown RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 ALPIP09923 528 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 ETS1P14921 441 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 CR2P20023 1033 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 PSMB4P28070 264 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 CD68P34810 354 aaPredicted RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 RPL22P35268 128 aaKnown RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 VPS41P49754 854 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 HK3P52790 923 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TERF1P54274 439 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 WNT3AP56704 352 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 YPEL5P62699 121 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TUBB4BP68371 445 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 LAMB3Q13751 1172 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 CLCA4Q14CN2 919 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 IRF4Q15306 451 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 SLC14A2Q15849 920 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 ALG11Q2TAA5 492 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 PHF19Q5T6S3 580 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 ALG1LQ6GMV1 187 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 ATCAYQ86WG3 371 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 GKN2Q86XP6 184 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 WFDC8Q8IUA0 241 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 CCNJLQ8IV13 435 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 SFTPA2Q8IWL1 248 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 SLC25A41Q8N5S1 370 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TP53I13Q8NBR0 393 aaPredicted RBP8.66□□□□□ -1.02
USP4-213ENST00000488520 LPCAT1Q8NF37 534 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 RTP4Q96DX8 246 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TMEM74Q96NL1 305 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 TBL1YQ9BQ87 522 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 RAB17Q9H0T7 212 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 KCTD5Q9NXV2 234 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 FOXJ2Q9P0K8 574 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 ANKMY1Q9P2S6 941 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 MRFAP1Q9Y605 127 aa8.66□□□□□ -1.02
USP4-213ENST00000488520 NBPF19A0A087WUL8 3843 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 C2orf81A6NN90 581 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 EFCAB8A8MWE9 144 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 A8MX80 341 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 C9orf172C9J069 976 aa8.65□□□□□ -1.02
USP4-213ENST00000488520 PDE2AO00408 941 aaPredicted RBP8.65□□□□□ -1.02
USP4-213ENST00000488520 AREL1O15033 823 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms