RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HES6Q96HZ4 224 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 NODALQ96S42 347 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 MMP28Q9H239 520 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 SEPT11Q9NVA2 429 aaKnown RBP5.72□□□□□ -1.49
USP40-213ENST00000483216 ARHGEF12Q9NZN5 1544 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 SPATA31E1Q6ZUB1 1445 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 UNC13BO14795 1591 aa5.72□□□□□ -1.49
USP40-213ENST00000483216 FSD2A1L4K1 749 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 OGG1O15527 345 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 SH3BP5O60239 455 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 HS6ST1O60243 411 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 LMX1BO60663 402 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 FRAT2O75474 233 aaPredicted RBP5.71□□□□□ -1.5
USP40-213ENST00000483216 WDHD1O75717 1129 aaPredicted RBP5.71□□□□□ -1.5
USP40-213ENST00000483216 KCNK5O95279 499 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 CRYAAP02489 173 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 ATP1A1P05023 1023 aaKnown RBP5.71□□□□□ -1.5
USP40-213ENST00000483216 UMODP07911 640 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 ZNF23P17027 643 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 FMO5P49326 533 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 GPR143P51810 404 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 GEMIN4P57678 1058 aaKnown RBP5.71□□□□□ -1.5
USP40-213ENST00000483216 COG7P83436 770 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 PLIN5Q00G26 463 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 OR7E24Q6IFN5 339 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 C4orf50Q6ZRC1 276 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 PLEKHM3Q6ZWE6 761 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 ZSCAN30Q86W11 494 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 PM20D2Q8IYS1 436 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 RASGEF1CQ8N431 466 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 EMC1Q8N766 993 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 TMEM255BQ8WV15 326 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 SEMA3CQ99985 751 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 TSPYL1Q9H0U9 437 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 TCP11L1Q9NUJ3 509 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 UHRF1BP1Q6BDS2 1440 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 PRAG1Q86YV5 1406 aa5.71□□□□□ -1.5
USP40-213ENST00000483216 FAM135AQ9P2D6 1515 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 TCF20Q9UGU0 1960 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 FAM172BPA6NC97 362 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 H3BQ06 376 aaPredicted RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 CAPN9O14815 690 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 GPC4O75487 556 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 LETM1O95202 739 aaPredicted RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 SRPRAP08240 638 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 ANXA7P20073 488 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 AMPHP49418 695 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 CAMPP49913 170 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 CDH8P55286 799 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 GAGE5Q13069 117 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 GAGE6Q13070 117 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 RBBP5Q15291 538 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 RARS2Q5T160 578 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 PDSS1Q5T2R2 415 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 STXBP5Q5T5C0 1151 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 FAM171BQ6P995 826 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 Q75L30 129 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 CCDC190Q86UF4 302 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 HSCBQ8IWL3 235 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 TEX11Q8IYF3 940 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 GCSAMQ8N6F7 178 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 EXOC6Q8TAG9 804 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 NUDCD1Q96RS6 583 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 EPYCQ99645 322 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 TREX2Q9BQ50 279 aaPredicted RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 CHCHD6Q9BRQ6 235 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 TRMT61BQ9BVS5 477 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 LRMDAQ9H2I8 198 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 PLK3Q9H4B4 646 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 GRPEL1Q9HAV7 217 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 ZFP57Q9NU63 452 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 TRMT1Q9NXH9 659 aaKnown RBP5.7□□□□□ -1.5
USP40-213ENST00000483216 POLG2Q9UHN1 485 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 KIF16BQ96L93 1317 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 RALGAPBQ86X10 1494 aa5.7□□□□□ -1.5
USP40-213ENST00000483216 ABCC1P33527 1531 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 ARAP3Q8WWN8 1544 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 DUOX2Q9NRD8 1548 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 PLCH2O75038 1416 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 A0A087WYN8 130 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 A0A0B4J293 547 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 OR5K3A6NET4 321 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 CDRT15L2A8MXV6 281 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 P2RY10O00398 339 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 EIF3DO15371 548 aaKnown RBP eCLIP5.69□□□□□ -1.5
USP40-213ENST00000483216 KRT86O43790 486 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 TMCC2O75069 709 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 ZBED4O75132 1171 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 IGKV3-20P01619 116 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 GM2AP17900 193 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 GABRB1P18505 474 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 MARK3P27448 753 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 ARCN1P48444 511 aaKnown RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 HOXA1P49639 335 aaPredicted RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 IKQ13123 557 aaPredicted RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 AIMP2Q13155 320 aaKnown RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 KRT81Q14533 505 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 RAB6CQ53S08 254 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 STPG1Q5TH74 334 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms