RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 THSD1Q9NS62 852 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 IMP3Q9NV31 184 aaKnown RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 ZDHHC3Q9NYG2 299 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 AKAP7Q9P0M2 348 aaPredicted RBP18.35■□□□□ 0.53
USP39-209ENST00000458268 WDR37Q9Y2I8 494 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 ASPMQ8IZT6 3477 aa18.35■□□□□ 0.53
USP39-209ENST00000458268 IGHV5-10-1A0A0J9YXX1 117 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 CCDC162PA2VCL2 907 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 RRP8O43159 456 aaKnown RBP18.34■□□□□ 0.53
USP39-209ENST00000458268 SUN1O94901 812 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 BRAFP15056 766 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 AMD1P17707 334 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 CCKBRP32239 447 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 SLC19A1P41440 591 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 PCBP4P57723 403 aaKnown RBP18.34■□□□□ 0.53
USP39-209ENST00000458268 CACNG1Q06432 222 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 GSE1Q14687 1217 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 NR1D2Q14995 579 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 C16orf72Q14CZ0 275 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 TSTD2Q5T7W7 516 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 SLITRK4Q8IW52 837 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 OTUD6BQ8N6M0 293 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 HDAC10Q969S8 669 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.34■□□□□ 0.53
USP39-209ENST00000458268 ZNF514Q96K75 400 aaPredicted RBP18.34■□□□□ 0.53
USP39-209ENST00000458268 WWP1Q9H0M0 922 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 ZNF624Q9P2J8 865 aaPredicted RBP18.34■□□□□ 0.53
USP39-209ENST00000458268 PIKFYVEQ9Y2I7 2098 aa18.34■□□□□ 0.53
USP39-209ENST00000458268 GOLGA6L10A0A0M3HER8 536 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 GOT2P00505 430 aaKnown RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 ATP1B2P14415 290 aaPredicted RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 ADRA1DP25100 572 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 ACRV1P26436 265 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 ITPKBP27987 946 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 COILP38432 576 aaPredicted RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 EIF2S3P41091 472 aaKnown RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 UBE2IP63279 158 aaKnown RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 PRAMEP78395 509 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 GPLD1P80108 840 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 CLCA4Q14CN2 919 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 PLCL1Q15111 1095 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 DBN1Q16643 649 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 COL28A1Q2UY09 1125 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 GPR33Q49SQ1 333 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 DUS1LQ6P1R4 473 aaKnown RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 CCDC137Q6PK04 289 aaKnown RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 C4orf22Q6V702 233 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 ZNF574Q6ZN55 896 aaPredicted RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 PIANPQ8IYJ0 282 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 CFAP206Q8IYR0 622 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 CLDN19Q8N6F1 224 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 AVL9Q8NBF6 648 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 ZNF778Q96MU6 729 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 ZNF578Q96N58 590 aaPredicted RBP18.33■□□□□ 0.52
USP39-209ENST00000458268 CMKLR1Q99788 373 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 SNX12Q9UMY4 172 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 TCAF1Q9Y4C2 921 aa18.33■□□□□ 0.52
USP39-209ENST00000458268 TCRBV7S3A2A0A539 114 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 MGAT4DA6NG13 374 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 MROH6A6NGR9 719 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 SLC35G4P0C7Q5 338 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 XRCC1P18887 633 aaPredicted RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 MGAT1P26572 445 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 ETV5P41161 510 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 ABCG1P45844 678 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 CFHR1Q03591 330 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 ZFP36L1Q07352 338 aaKnown RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 LAMB3Q13751 1172 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 GPR18Q14330 331 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 KRT33BQ14525 404 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 BRD3Q15059 726 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 AFTPHQ6ULP2 937 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 TMEM26Q6ZUK4 368 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 FAM129CQ86XR2 697 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 LILRA3Q8N6C8 439 aaPredicted RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 GPR150Q8NGU9 434 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 PRR11Q96HE9 360 aaPredicted RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 C12orf66Q96MD2 445 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 SLC46A1Q96NT5 459 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 ASCL3Q9NQ33 180 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 EIF2B3Q9NR50 452 aaKnown RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 POT1Q9NUX5 634 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 BFARQ9NZS9 450 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 RALYQ9UKM9 306 aaKnown RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 PCDHGA8Q9Y5G5 932 aa18.32■□□□□ 0.52
USP39-209ENST00000458268 ANKRD11Q6UB99 2663 aaPredicted RBP18.32■□□□□ 0.52
USP39-209ENST00000458268 ADAMTS20P59510 1910 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 KMT2BQ9UMN6 2715 aaPredicted RBP18.31■□□□□ 0.52
USP39-209ENST00000458268 GOLGA8MH3BSY2 632 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 H7C0S8 307 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 KCNJ13O60928 360 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 PHF2O75151 1096 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 CSTF2P33240 577 aaKnown RBP eCLIP18.31■□□□□ 0.52
USP39-209ENST00000458268 PRLHRP49683 370 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 LIMK2P53671 638 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 EIF3IQ13347 325 aaKnown RBP18.31■□□□□ 0.52
USP39-209ENST00000458268 RPE65Q16518 533 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 BCL7AQ4VC05 210 aa18.31■□□□□ 0.52
USP39-209ENST00000458268 FASTKD1Q53R41 847 aaKnown RBP18.31■□□□□ 0.52
USP39-209ENST00000458268 AGAP9Q5VTM2 703 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms