RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 FAM162AQ96A26 154 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ASB9Q96DX5 294 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 SLC29A1Q99808 456 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 DCUN1D5Q9BTE7 237 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 TRIM54Q9BYV2 358 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PARVBQ9HBI1 364 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 FARSBQ9NSD9 589 aaKnown RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 MTRRQ9UBK8 725 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PNMA8BQ9ULN7 279 aaPredicted RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 INSL5Q9Y5Q6 135 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 SCN10AQ9Y5Y9 1956 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 IGLV3-10A0A075B6K4 115 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 MYO1GB0I1T2 1018 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 TMEM189-UBE2V1I3L0A0 370 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ATP6V1G1O75348 118 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ULK1O75385 1050 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 CPSF4O95639 269 aaKnown RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 MLYCDO95822 493 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 MTHFD2P13995 350 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 HNF1BP35680 557 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 NNMTP40261 264 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 GSSP48637 474 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 CASP9P55211 416 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PRKG2Q13237 762 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 GTF2H3Q13889 308 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PNPT1Q8TCS8 783 aaKnown RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PXYLP1Q8TE99 480 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 SELENOMQ8WWX9 145 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 PLD4Q96BZ4 506 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 LRRC58Q96CX6 371 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 MPP4Q96JB8 637 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ATOH8Q96SQ7 321 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 TUBB1Q9H4B7 451 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ALG2Q9H553 416 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 INTS10Q9NVR2 710 aaKnown RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 CNOT6Q9ULM6 557 aaKnown RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF232Q9UNY5 417 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 ARIH1Q9Y4X5 557 aaPredicted RBP11.82□□□□□ -0.52
SMPD4-213ENST00000454468 SQORQ9Y6N5 450 aa11.82□□□□□ -0.52
SMPD4-213ENST00000454468 A6NHS1 94 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 NME4O00746 187 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 EPOP01588 193 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 HK2P52789 917 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 CACNG1Q06432 222 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 GSTA3Q16772 222 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 PAGE3Q5JUK9 113 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 TMTC4Q5T4D3 741 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF683Q8IZ20 524 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 TEX26Q8N6G2 289 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 DPF3Q92784 378 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 AURKBQ96GD4 344 aaPredicted RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 SPATA17Q96L03 361 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 NSMCE2Q96MF7 247 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF490Q9ULM2 529 aaPredicted RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 A0A1B0GTW7 788 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 ABCB1P08183 1280 aaPredicted RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 HMGA1P17096 107 aaKnown RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 YAP1P46937 504 aaKnown RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 SLC5A9Q2M3M2 681 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 SYTL3Q4VX76 610 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 LARP4Q71RC2 724 aaKnown RBP eCLIP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 CHST15Q7LFX5 561 aaPredicted RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 ITIH5Q86UX2 942 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 FUNDC1Q8IVP5 155 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 RNF168Q8IYW5 571 aaPredicted RBP11.81□□□□□ -0.52
SMPD4-213ENST00000454468 OR2T34Q8NGX1 318 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 OR2T3Q8NH03 318 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 FAM81AQ8TBF8 368 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 DLG3Q92796 817 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 GATA6Q92908 595 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 RANBP9Q96S59 729 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 CERS4Q9HA82 394 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 MOSPD1Q9UJG1 213 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 PRSS21Q9Y6M0 314 aa11.81□□□□□ -0.52
SMPD4-213ENST00000454468 CASQ2O14958 399 aaPredicted RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF682O95780 498 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 PTGER3P43115 390 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 PPP3CCP48454 512 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF140P52738 457 aaPredicted RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 ERVPABLB-1P60509 514 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 SMARCB1Q12824 385 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 LMAN2Q12907 356 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 PHKG1Q16816 387 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 FAM174BQ3ZCQ3 159 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 PABPC1LQ4VXU2 614 aaKnown RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 LETMD1Q6P1Q0 360 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 SLC15A3Q8IY34 581 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 RBFAQ8N0V3 343 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 ZNF599Q96NL3 588 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 COPS8Q99627 209 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 LIN28AQ9H9Z2 209 aaKnown RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 EIF3LQ9Y262 564 aaKnown RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 RNF11Q9Y3C5 154 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 TDRD15B5MCY1 1934 aaKnown RBP11.8□□□□□ -0.52
SMPD4-213ENST00000454468 A0A1B0GVG6 124 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 PER2O15055 1255 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 WDR47O94967 919 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 NTRK1P04629 796 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 UROSP10746 265 aa11.8□□□□□ -0.52
SMPD4-213ENST00000454468 EPB42P16452 691 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms