RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 FGF1P05230 155 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 FAM182AQ5T1J6 154 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 CCSAPQ6IQ19 270 aaPredicted RBP14.35□□□□□ -0.11
PTPRU-204ENST00000428026 CFAP52Q8N1V2 620 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 RAB2BQ8WUD1 216 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 TNFRSF25Q93038 417 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF570Q96NI8 536 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 ATP13A3Q9H7F0 1226 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 SEMA3GQ9NS98 782 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 PADI3Q9ULW8 664 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 SPEF1Q9Y4P9 236 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 IGKV6D-41A0A0C4DH26 115 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 WWP2O00308 870 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 HMGB3O15347 200 aaKnown RBP14.35□□□□□ -0.11
PTPRU-204ENST00000428026 MTHFD1P11586 935 aaKnown RBP14.35□□□□□ -0.11
PTPRU-204ENST00000428026 PPIBP23284 216 aaKnown RBP14.35□□□□□ -0.11
PTPRU-204ENST00000428026 PTGS2P35354 604 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 GPR1P46091 355 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 OR2B6P58173 313 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 USP41Q3LFD5 358 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 C2orf73Q8N5S3 287 aaPredicted RBP14.35□□□□□ -0.11
PTPRU-204ENST00000428026 OR4K2Q8NGD2 314 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 GPR21Q99679 349 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 SEC14L3Q9UDX4 400 aa14.35□□□□□ -0.11
PTPRU-204ENST00000428026 CPSF4LA6NMK7 179 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF99A8MXY4 864 aaPredicted RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PIP5K1BO14986 540 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PAGE1O75459 146 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 CDH12P55289 794 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 CLCQ05315 142 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SWI5Q1ZZU3 235 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SLC25A52Q3SY17 297 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF730Q6ZMV8 503 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SLC26A9Q7LBE3 791 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 CPNE8Q86YQ8 564 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AGO3Q9H9G7 860 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PREBQ9HCU5 417 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 DNMT3LQ9UJW3 386 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SLC30A4O14863 429 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SPATA31D3P0C874 917 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 FAUP35544 74 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 IST1P53990 364 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PRMT2P55345 433 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 MAZP56270 477 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ACTR3P61158 418 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PCBP1Q15365 356 aaKnown RBP eCLIP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TRMT10BQ6PF06 316 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ULK3Q6PHR2 472 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SPATA31D4Q6ZUB0 917 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SPATA22Q8NHS9 363 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 XAGE5Q8WWM1 108 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 FEM1CQ96JP0 617 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 UROC1Q96N76 676 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TTYH3Q9C0H2 523 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TBC1D17Q9HA65 648 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AMBNQ9NP70 447 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AHDC1Q5TGY3 1603 aaPredicted RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 COL6A2P12110 1019 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 JAM2P57087 298 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 MTPNP58546 118 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TCEAL5Q5H9L2 206 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TMEM198Q66K66 360 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AGMOQ6ZNB7 445 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SLC4A11Q8NBS3 891 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TNFAIP8L1Q8WVP5 186 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 C17orf50Q8WW18 174 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ESAMQ96AP7 390 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AGAP2Q99490 1192 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 LMAN2LQ9H0V9 348 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 LIN28AQ9H9Z2 209 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 AFDNP55196 1824 aaKnown RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF142P52746 1687 aaPredicted RBP14.34□□□□□ -0.11
PTPRU-204ENST00000428026 GSAPA4D1B5 854 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 C5orf60A6NFR6 353 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 PDLIM1O00151 329 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 CCRL2O00421 344 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF432O94892 652 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 CXCL14O95715 111 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 NMBRP28336 390 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 BRCC3P46736 316 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 MBTD1Q05BQ5 628 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 RBFAQ8N0V3 343 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 NAT16Q8N8M0 369 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 SCAIQ8N9R8 606 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.34□□□□□ -0.111e-6■■■■■ 27.9
PTPRU-204ENST00000428026 IPPKQ9H8X2 491 aa14.34□□□□□ -0.11
PTPRU-204ENST00000428026 TOP3BO95985 862 aaKnown RBP14.33□□□□□ -0.11
PTPRU-204ENST00000428026 IRAK1BP1Q5VVH5 260 aa14.33□□□□□ -0.11
PTPRU-204ENST00000428026 CSGALNACT1Q8TDX6 532 aa14.33□□□□□ -0.11
PTPRU-204ENST00000428026 ZNF354BQ96LW1 612 aa14.33□□□□□ -0.11
PTPRU-204ENST00000428026 COPS8Q99627 209 aa14.33□□□□□ -0.11
PTPRU-204ENST00000428026 SDCBP2Q9H190 292 aa14.33□□□□□ -0.11
PTPRU-204ENST00000428026 MOV10Q9HCE1 1003 aaKnown RBP14.33□□□□□ -0.11
PTPRU-204ENST00000428026 FABP12A6NFH5 140 aa14.33□□□□□ -0.12
PTPRU-204ENST00000428026 EFCAB9A8MZ26 197 aa14.33□□□□□ -0.12
PTPRU-204ENST00000428026 SLC25A14O95258 325 aaPredicted RBP14.33□□□□□ -0.12
PTPRU-204ENST00000428026 PSKH1P11801 424 aa14.33□□□□□ -0.12
PTPRU-204ENST00000428026 NDUFV1P49821 464 aa14.33□□□□□ -0.12
PTPRU-204ENST00000428026 SMCO1Q147U7 214 aa14.33□□□□□ -0.12
PTPRU-204ENST00000428026 HECTD3Q5T447 861 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms