RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 CDC16Q13042 620 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 PDAP1Q13442 181 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 GAB4Q2WGN9 574 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 LSM12Q3MHD2 195 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 FBXO43Q4G163 708 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 C2orf27AQ580R0 203 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 UGT3A1Q6NUS8 523 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 ZFP1Q6P2D0 407 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 PGM2L1Q6PCE3 622 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 C11orf74Q86VG3 221 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 CIR1Q86X95 450 aaPredicted RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 PROSER1Q86XN7 944 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 DEFB107AQ8IZN7 70 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 PGBD5Q8N414 524 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 NKAPQ8N5F7 415 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 ACVR1CQ8NER5 493 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 KCNV2Q8TDN2 545 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.78□□□□□ -0.362e-10■■■■■ 34
SMARCB1-203ENST00000407082 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 MAELQ96JY0 434 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 MYCBPQ99417 103 aaPredicted RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 TTC1Q99614 292 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 SPON2Q9BUD6 331 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 GTPBP2Q9BX10 602 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 VCXQ9H320 206 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 TFB2MQ9H5Q4 396 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 UTP6Q9NYH9 597 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 TAS2R13Q9NYV9 303 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 ZDHHC2Q9UIJ5 367 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 TBC1D30Q9Y2I9 924 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 LRCH1Q9Y2L9 728 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 GPSM3Q9Y4H4 160 aa12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.78□□□□□ -0.36
SMARCB1-203ENST00000407082 PCNX2A6NKB5 2137 aa12.77□□□□□ -0.36
SMARCB1-203ENST00000407082 ITPR1Q14643 2758 aa12.77□□□□□ -0.36
SMARCB1-203ENST00000407082 DMXL2Q8TDJ6 3036 aa12.77□□□□□ -0.36
SMARCB1-203ENST00000407082 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 H0Y626 953 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 GOT2P00505 430 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 CFIP05156 583 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 CHRNGP07510 517 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 ANPEPP15144 967 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 ENGP17813 658 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 LPOP22079 712 aaPredicted RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 ARRB2P32121 409 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 OPRD1P41143 372 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 TTPAP49638 278 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 RPL26P61254 145 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 SLC25A3Q00325 362 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 RAD51Q06609 339 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 DLG1Q12959 904 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 SQLEQ14534 574 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 GSTA3Q16772 222 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 TYSND1Q2T9J0 566 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 INO80DQ53TQ3 878 aaPredicted RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 RBM20Q5T481 1227 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 VWA5B1Q5TIE3 1220 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 IRGCQ6NXR0 463 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 C12orf40Q86WS4 652 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 ETFBKMTQ8IXQ9 262 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 TMEFF1Q8IYR6 380 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 LSMEM2Q8N112 164 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 STK40Q8N2I9 435 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 CARNMT1Q8N4J0 409 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 HDDC3Q8N4P3 179 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 KDM1BQ8NB78 822 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 TXNDC5Q8NBS9 432 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 STAG3L4Q8TBR4 150 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 WDR60Q8WVS4 1066 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 RLN3Q8WXF3 142 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 CDKN2AIPNLQ96HQ2 116 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 TBATAQ96M53 351 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 PANX3Q96QZ0 392 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 AARSD1Q9BTE6 412 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 MRPL1Q9BYD6 325 aaKnown RBP12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 SLC2A11Q9BYW1 496 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 NUF2Q9BZD4 464 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 MEAF6Q9HAF1 191 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 S100A14Q9HCY8 104 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 DEC1Q9P2X7 70 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 CLEC4EQ9ULY5 219 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 GON4LQ3T8J9 2241 aa12.77□□□□□ -0.37
SMARCB1-203ENST00000407082 ANKRD36A6QL64 1941 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 LOC100653049A0A140TA62 436 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 A8MT66 165 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 TULP3O75386 442 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 KRT34O76011 436 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 STAMBPO95630 424 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 ITGAXP20702 1163 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 EIF2DP41214 584 aaKnown RBP12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 DGKGP49619 791 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 STC1P52823 247 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 INHBCP55103 352 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 MTTPP55157 894 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 SESN3P58005 492 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 STX1BP61266 288 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 CDH18Q13634 790 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 BNC2Q6ZN30 1099 aaPredicted RBP12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 FRMD7Q6ZUT3 714 aa12.76□□□□□ -0.37
SMARCB1-203ENST00000407082 LPCAT2Q7L5N7 544 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms