RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 MMP28Q9H239 520 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 PRMT7Q9NVM4 692 aaPredicted RBP9.22□□□□□ -0.93
COL28A1-201ENST00000399429 MAP10Q9P2G4 905 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 OR12D3Q9UGF7 316 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 LRP6O75581 1613 aa9.22□□□□□ -0.93
COL28A1-201ENST00000399429 A0A1B0GW55 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 CXCR6O00574 342 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 NUPL2O15504 423 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DHX15O43143 795 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 GJB1P08034 283 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L2P0CJ85 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L3P0CJ86 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L4P0CJ87 422 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L5P0CJ88 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L6P0CJ89 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4L7P0CJ90 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 COL6A1P12109 1028 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 EEFSECP57772 596 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 PPP2R2BQ00005 443 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 GRB7Q14451 532 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 SUZ12Q15022 739 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 EEF1DP3Q658K8 133 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 PTRHD1Q6GMV3 140 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 HID1Q8IV36 788 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 GPR65Q8IYL9 337 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 B3GALNT2Q8NCR0 500 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 LSM14AQ8ND56 463 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 CLEC4CQ8WTT0 213 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 FRS2Q8WU20 508 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 GTF2H4Q92759 462 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 C1GALT1C1Q96EU7 318 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 CAMKK2Q96RR4 588 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 GPR22Q99680 433 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 SLC2A11Q9BYW1 496 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 MUC3BQ9H195 1237 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 SERHL2Q9H4I8 314 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 CACYBPQ9HB71 228 aaKnown RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 SERHLQ9NQF3 203 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 MPP6Q9NZW5 540 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 COL20A1Q9P218 1284 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DUX4Q9UBX2 424 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 LYVE1Q9Y5Y7 322 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 DNMT3AQ9Y6K1 912 aaPredicted RBP9.21□□□□□ -0.93
COL28A1-201ENST00000399429 CLCA3PQ9Y6N3 262 aa9.21□□□□□ -0.93
COL28A1-201ENST00000399429 A0A1W2PP18 115 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ENTPD3O75355 529 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 C9P02748 559 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 POU2F1P14859 743 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ITGB6P18564 788 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 PTPN3P26045 913 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 CAP2P40123 477 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 WNT7BP56706 349 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 EMX1Q04741 257 aaPredicted RBP9.21□□□□□ -0.94
COL28A1-201ENST00000399429 LGALS3BPQ08380 585 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 WSCD2Q2TBF2 565 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 AP5B1Q2VPB7 878 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 RC3H1Q5TC82 1133 aaKnown RBP9.21□□□□□ -0.94
COL28A1-201ENST00000399429 TIGD7Q6NT04 549 aaPredicted RBP9.21□□□□□ -0.94
COL28A1-201ENST00000399429 GPRIN3Q6ZVF9 776 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 FAM109AQ8N4B1 249 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ARFGAP1Q8N6T3 406 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ZDHHC15Q96MV8 337 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 CATSPERBQ9H7T0 1116 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 NKIRAS2Q9NYR9 191 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 TMEM181Q9P2C4 612 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 NALCNQ8IZF0 1738 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 PRAMEF33A0A0G2JMD5 474 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 KPNA6O60684 536 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 PRAMEF10O60809 474 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 CILPO75339 1184 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 SLITRK5O94991 958 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 LRATO95237 230 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 OR4D2P58180 307 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 MAXP61244 160 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 LRIT3Q3SXY7 679 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 STRIP1Q5VSL9 837 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 LCN1P1Q5VSP4 162 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 SIGIRRQ6IA17 410 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 SH2D5Q6ZV89 423 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 RRM2BQ7LG56 351 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ANKRD46Q86W74 232 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 SGCDQ92629 289 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 NTPCRQ9BSD7 190 aaKnown RBP9.21□□□□□ -0.94
COL28A1-201ENST00000399429 TKTL2Q9H0I9 626 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 TNKS2Q9H2K2 1166 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 SLA2Q9H6Q3 261 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 CMTM6Q9NX76 183 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 ARFGEF2Q9Y6D5 1785 aa9.21□□□□□ -0.94
COL28A1-201ENST00000399429 BNIP3LO60238 219 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 SH3BGRLO75368 114 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ZBTB7AO95365 584 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 ITGB1P05556 798 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 S100A9P06702 114 aaKnown RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 PIM1P11309 404 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 XPAP23025 273 aaPredicted RBP9.2□□□□□ -0.94
COL28A1-201ENST00000399429 DNAJB2P25686 324 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CXCR3P49682 368 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 HMGCS2P54868 508 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 CDC42P60953 191 aa9.2□□□□□ -0.94
COL28A1-201ENST00000399429 MVKQ03426 396 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms