RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 LENG1Q96BZ8 264 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NXNL1Q96CM4 212 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CLPTM1LQ96KA5 538 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 SNX27Q96L92 541 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PDZD7Q9H5P4 517 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CHRAC1Q9NRG0 131 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ELOVL2Q9NXB9 296 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ABI3Q9P2A4 366 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 WBP11Q9Y2W2 641 aaKnown RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 MAGEB17A8MXT2 336 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CCL16O15467 120 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PTPN2P17706 415 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CDH3P22223 829 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 HOXC12P31275 282 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ARL13AQ5H913 290 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 OLFML2AQ68BL7 652 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PSRC1Q6PGN9 363 aaPredicted RBP5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CHST9Q7L1S5 443 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NPAS4Q8IUM7 802 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 KBTBD2Q8IY47 623 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 ARL10Q8N8L6 244 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 JOSD2Q8TAC2 188 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 CAB39LQ9H9S4 337 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 PNPOQ9NVS9 261 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 FZD10Q9ULW2 581 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 TCAF1Q9Y4C2 921 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 NALCNQ8IZF0 1738 aa5.4□□□□□ -1.54
VPS13C-204ENST00000395898 LRRC72A6NJI9 287 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 MSI1O43347 362 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 NPHS1O60500 1241 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 MATN4O95460 622 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 EPHX1P07099 455 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ANXA4P09525 319 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 IL7RP16871 459 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 IL18Q14116 193 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 CRTC3Q6UUV7 619 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ALG3Q92685 438 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SLC38A4Q969I6 547 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 KLHL5Q96PQ7 755 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 S100A14Q9HCY8 104 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 PDP1Q9P0J1 537 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 GRIN2DO15399 1336 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 MED1Q15648 1581 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 RIIAD1A6NNX1 92 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 REM1O75628 298 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 PCCBP05166 539 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 UGT2B4P06133 528 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 S100A9P06702 114 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ALAS2P22557 587 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 RPP38P78345 283 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 EEF1DP3Q658K8 133 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ESRP1Q6NXG1 681 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 FAM47BQ8NA70 645 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SLC43A3Q8NBI5 491 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SLC9A6Q92581 669 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 C1GALT1C1Q96EU7 318 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 RIPOR3Q96MK2 946 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 KCTD15Q96SI1 283 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 IPPKQ9H8X2 491 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 PLEKHA1Q9HB21 404 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ERVK-5Q9HDB9 667 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 MAT2BQ9NZL9 334 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 CNOT6Q9ULM6 557 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SCN2BO60939 215 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 DBTP11182 482 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 DMPKQ09013 629 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 GRSF1Q12849 480 aaKnown RBP eCLIP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 TIGD2Q4W5G0 525 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SDHAF4Q5VUM1 108 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 HGSNATQ68CP4 663 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 PLET1Q6UQ28 207 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF527Q8NB42 609 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 HMCESQ96FZ2 354 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 TSSK3Q96PN8 268 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 COMMD4Q9H0A8 199 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 TRMT13Q9NUP7 481 aaKnown RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SMPD3Q9NY59 655 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ATXN10Q9UBB4 475 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 GTF2IRD1Q9UHL9 959 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ASB3Q9Y575 518 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 FADS3Q9Y5Q0 445 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 BTBD19C9JJ37 291 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 PSMD11O00231 422 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 TNFRSF11BO00300 401 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 BCKDKO14874 412 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 IFNW1P05000 195 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 GAD2Q05329 585 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZCCHC12Q6PEW1 402 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 FRRS1Q6ZNA5 592 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 SAPCD2Q86UD0 394 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 CCDC36Q8IYA8 594 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF567Q8N184 647 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 GSTCDQ8NEC7 633 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 XAGE5Q8WWM1 108 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 BORCS5Q969J3 196 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 POLMQ9NP87 494 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF446Q9NWS9 450 aa5.4□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF142P52746 1687 aaPredicted RBP5.4□□□□□ -1.55
VPS13C-204ENST00000395898 USP2O75604 605 aaPredicted RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms