RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 GRID2O43424 1007 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 LMAN1P49257 510 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 DHPSP49366 369 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 NUMBP49757 651 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SERPINB9P50453 376 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 CTSCP53634 463 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SLC18A1P54219 525 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PMS2P54278 862 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GRB7Q14451 532 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 KLHL38Q2WGJ6 581 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ZCCHC8Q6NZY4 707 aaKnown RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 IYDQ6PHW0 289 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PDZD3Q86UT5 571 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GKN2Q86XP6 184 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GIMAP7Q8NHV1 300 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 FLVCR1-AS1Q8TAF5 88 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 CD200R1Q8TD46 325 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ACMSDQ8TDX5 336 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PYROXD1Q8WU10 500 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF592Q92610 1267 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ZNF669Q96BR6 464 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GRAMD1AQ96CP6 724 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 MTBPQ96DY7 904 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PARD6BQ9BYG5 372 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 DPH5Q9H2P9 285 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 VIPAS39Q9H9C1 493 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SAYSD1Q9NPB0 183 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 FZD3Q9NPG1 666 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 POT1Q9NUX5 634 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 EPHA6Q9UF33 1036 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 RAB23Q9ULC3 237 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SLC30A1Q9Y6M5 507 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PFDN6O15212 129 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 AQP9O43315 295 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 BNIP3LO60238 219 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 BANF1O75531 89 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 C9P02748 559 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ANKRD34CP0C6C1 535 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 TPBGLP0DKB5 382 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 COL6A2P12110 1019 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 ENO3P13929 434 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 BRAFP15056 766 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 PHBP35232 272 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 GP5P40197 560 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 IRX4P78413 519 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 BEND6Q5SZJ8 279 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SDCCAG8Q86SQ7 713 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 WDR48Q8TAF3 677 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 UBTD2Q8WUN7 234 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 RTKNQ9BST9 563 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 C1QTNF3Q9BXJ4 246 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 COG4Q9H9E3 785 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SPATS2LQ9NUQ6 558 aaKnown RBP6.89□□□□□ -1.31
LIMA1-202ENST00000394943 SLC23A2Q9UGH3 650 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 NFU1Q9UMS0 254 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 OR1A2Q9Y585 309 aa6.89□□□□□ -1.31
LIMA1-202ENST00000394943 MN1Q10571 1320 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CXorf49A8MYA2 514 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SLC31A1O15431 190 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 NUDT21O43809 227 aaKnown RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 VAPBO95292 243 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ENO2P09104 434 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 RALBP11234 206 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PKMP14618 531 aaKnown RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CCR7P32248 378 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 GGT5P36269 586 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 C21orf59P57076 290 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CRADDP78560 199 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PPARDQ03181 441 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CYP2A13Q16696 494 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PPP1R3AQ16821 1122 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 INAVAQ3KP66 663 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TRIM61Q5EBN2 209 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UBAP2Q5T6F2 1119 aaKnown RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ZBED8Q8IZ13 594 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ARL10Q8N8L6 244 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PHC3Q8NDX5 983 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 GANCQ8TET4 914 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 GPR78Q96P69 363 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 PANX3Q96QZ0 392 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SARGQ9BW04 601 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SUDS3Q9H7L9 328 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 BPIFA1Q9NP55 256 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CD84Q9UIB8 345 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CHMP2BQ9UQN3 213 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 INVSQ9Y283 1065 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 HEBP2Q9Y5Z4 205 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 VCANP13611 3396 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 ESYT3A0FGR9 886 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 EME2A4GXA9 379 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 CFAP99D6REC4 459 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 NEMP1O14524 444 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 TOX3O15405 576 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A9O60656 530 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 SLC25A14O95258 325 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-202ENST00000394943 OR56A5P0C7T3 313 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A6P19224 532 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A1P22309 533 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A4P22310 534 aa6.88□□□□□ -1.31
LIMA1-202ENST00000394943 UGT1A3P35503 534 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms