RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SLC27A1Q6PCB7 646 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 OR5J2Q8NH18 312 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 COQ8AQ8NI60 647 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 JOSD2Q8TAC2 188 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 YTHDF1Q9BYJ9 559 aaKnown RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 DPAGT1Q9H3H5 408 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TVP23BQ9NYZ1 205 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 UXTQ9UBK9 157 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 PHF24Q9UPV7 400 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 RIIAD1A6NNX1 92 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 XRCC1P18887 633 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 NFIAQ12857 509 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 PON2Q15165 354 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SLC39A12Q504Y0 691 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 HEXDCQ8WVB3 486 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 MYO3AQ8NEV4 1616 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SCN2BO60939 215 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CTPS1P17812 591 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 SKP1P63208 163 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 IQCCQ4KMZ1 466 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF782Q6ZMW2 699 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TOMM5Q8N4H5 51 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CANT1Q8WVQ1 401 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 TMEM203Q969S6 136 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 EXOC2Q96KP1 924 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 ITPAQ9BY32 194 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 NECTIN3Q9NQS3 549 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 CHRAC1Q9NRG0 131 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 MAB21L2Q9Y586 359 aa11.73□□□□□ -0.53
SYNPO-202ENST00000394243 NPHP4O75161 1426 aaPredicted RBP11.73□□□□□ -0.53
SYNPO-202ENST00000394243 PIP5K1BO14986 540 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 NME6O75414 186 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 GLDCP23378 1020 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 WNT3AP56704 352 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 TGFB2P61812 414 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CLCQ05315 142 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF423Q2M1K9 1284 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 FAM91A1Q658Y4 838 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 C11orf65Q8NCR3 313 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 PURBQ96QR8 312 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 PHOX2BQ99453 314 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ZYG11BQ9C0D3 744 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 MYH10P35580 1976 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 RLN2P04090 185 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ITPKAP23677 461 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 RPL19P84098 196 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 TAF1CQ15572 869 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 VSTM1Q6UX27 236 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 UBE2R2Q712K3 238 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CMTR2Q8IYT2 770 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 HBEGFQ99075 208 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 SAV1Q9H4B6 383 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 IGSF9Q9P2J2 1179 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 RIMKLBQ9ULI2 386 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 SPHKAPQ2M3C7 1700 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 RBM47A0AV96 593 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ANXA2P2A6NMY6 339 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 PPEF2O14830 753 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CSN2P05814 226 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ANXA2P07355 339 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 PEPDP12955 493 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 DNASE1L1P49184 302 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 KLHL22Q53GT1 634 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 FAM151BQ6UXP7 276 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 IRF2BP1Q8IU81 584 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 LIX1Q8N485 282 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 GRIN3AQ8TCU5 1115 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 KCNC2Q96PR1 638 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 WACQ9BTA9 647 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 LOC100509620A0A075B734 347 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 MYCLP1P12525 358 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 WDR4P57081 412 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 QSOX2Q6ZRP7 698 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ISOC1Q96CN7 298 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 SLC30A2Q9BRI3 323 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 TM6SF2Q9BZW4 377 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 GADD45GO95257 159 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF182P17025 639 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CSTF2P33240 577 aaKnown RBP eCLIP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF81P51508 661 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 LIMK2P53671 638 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 GTF2BQ00403 316 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 MPPE1Q53F39 396 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 UBAP2Q5T6F2 1119 aaKnown RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CACUL1Q86Y37 369 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 TRPV4Q9HBA0 871 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 TMX2Q9Y320 296 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 PITPNM1O00562 1244 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 AMHP03971 560 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ERBB2P04626 1255 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 CPN2P22792 545 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 LCN1P31025 176 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ADAM15Q13444 863 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 UGT8Q16880 541 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 FSTL4Q6MZW2 842 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 C12orf29Q8N999 325 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 C7orf57Q8NEG2 295 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 NKX2-3Q8TAU0 364 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 DNAJB3Q8WWF6 145 aa11.72□□□□□ -0.53
SYNPO-202ENST00000394243 ASB9Q96DX5 294 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms