RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ST14Q9Y5Y6 855 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SPATA31A6Q5VVP1 1343 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 TSPOAP1O95153 1857 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 NWD1Q149M9 1564 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GSTM2P28161 218 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ABCG1P45844 678 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 RELAQ04206 551 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GIT2Q14161 759 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 DCST1Q5T197 706 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 METTL4Q8N3J2 472 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SPATA22Q8NHS9 363 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SNX18Q96RF0 628 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 MRI1Q9BV20 369 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 LRRC4CQ9HCJ2 640 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GAKO14976 1311 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 TGFBIQ15582 683 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 C6orf89Q6UWU4 347 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 C16orf86Q6ZW13 317 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ZUFSPQ96AP4 578 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 POTEKPQ9BYX7 375 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 COQ10BQ9H8M1 238 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 INTS7Q9NVH2 962 aaKnown RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 MTMR4Q9NYA4 1195 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 TNFRSF11BO00300 401 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 AGMOQ6ZNB7 445 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GADL1Q6ZQY3 521 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 KIAA0895Q8NCT3 520 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 REPS2Q8NFH8 660 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 DYNLL2Q96FJ2 89 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 APOC3P02656 99 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 OGFOD2Q6N063 350 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 CHRDL2Q6WN34 429 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 PHF13Q86YI8 300 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 NCSTNQ92542 709 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 CISHQ9NSE2 258 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GPATCH2Q9NW75 528 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 K7EPI3 171 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 E2F1Q01094 437 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SELPLGQ14242 412 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 REP15Q6BDI9 236 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 CYP20A1Q6UW02 462 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SCML4Q8N228 414 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SLC35C1Q96A29 364 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 C3orf49Q96BT1 292 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 TBCDQ9BTW9 1192 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SYT4Q9H2B2 425 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 GKN3PP0CG01 181 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 RASGEF1BQ0VAM2 473 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 EIPR1Q53HC9 387 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SPATA33Q96N06 139 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 PELOQ9BRX2 385 aaKnown RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF341Q9BYN7 854 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 MTG2Q9H4K7 406 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 ERVK-5Q9HDB9 667 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 RPH3AQ9Y2J0 694 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-203ENST00000353578 RP1P56715 2156 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 KIF1AQ12756 1690 aa12.49□□□□□ -0.41
COL6A3-203ENST00000353578 SPTLC1O15269 473 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 DSG2Q14126 1118 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TMEM119Q4V9L6 283 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 KCNT2Q6UVM3 1135 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SLC7A6OSQ96CW6 309 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TMEM176AQ96HP8 235 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 WASF2Q9Y6W5 498 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 TNFRSF10AO00220 468 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 BNIP3LO60238 219 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 KERAO60938 352 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 PRPS2P11908 318 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ARSKQ6UWY0 536 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SAPCD2Q86UD0 394 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 COMMD7Q86VX2 200 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ZNF248Q8NDW4 579 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SLC7A5P2Q9GIP4 190 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 PCYT1BQ9Y5K3 369 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RP1L1Q8IWN7 2480 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 USP17L10C9JJH3 530 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 DCLK1O15075 740 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RDH16O75452 317 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 MTA2O94776 668 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RAB36O95755 333 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 LINGO3P0C6S8 592 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SREBF1P36956 1147 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 C2orf80Q0P641 193 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 DNASE1L3Q13609 305 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 NFE2Q16621 373 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 STON2Q8WXE9 905 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 S100A16Q96FQ6 103 aaKnown RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SLC45A3Q96JT2 553 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SYT15Q9BQS2 421 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FUZQ9BT04 418 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 FAM49AQ9H0Q0 323 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-203ENST00000353578 BRD9Q9H8M2 597 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 H3BNH8 94 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 CYP27B1O15528 508 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 RASAL1O95294 804 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 GTF2F2P13984 249 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 SLC2A5P22732 501 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 ARL4DP49703 201 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 CYP1B1Q16678 543 aa12.48□□□□□ -0.41
COL6A3-203ENST00000353578 MAPKAP1Q9BPZ7 522 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms