RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MPP4Q96JB8 637 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 ZFYVE19Q96K21 471 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 KLHL32Q96NJ5 620 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 BIRC8Q96P09 236 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 DRC3Q9H069 523 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 BRD9Q9H8M2 597 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 PCDHB1Q9Y5F3 818 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 ANKRD12Q6UB98 2062 aa12.68□□□□□ -0.38
CLK3-201ENST00000345005 GLYATL1P3A0A0U1RQE8 302 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 NPIPB15A6NHN6 443 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 HDAC3O15379 428 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 PRAMEF1O95521 474 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 CYP2A6P11509 494 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 IDO1P14902 403 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 ZNF37AP17032 561 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 ZNF7P17097 686 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 BPIP17213 487 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 TFEBP19484 476 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 TPP2P29144 1249 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 PRKAA1Q13131 559 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 FLOT2Q14254 428 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 TANGO2Q6ICL3 276 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 UGT3A1Q6NUS8 523 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 MAVSQ7Z434 540 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 SATL1Q86VE3 508 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 C12orf40Q86WS4 652 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 SLC22A9Q8IVM8 553 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 NKAPQ8N5F7 415 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 GRIN3AQ8TCU5 1115 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 HCAR2Q8TDS4 363 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 MYLIPQ8WY64 445 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 UNKQ9C0B0 810 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 ASB8Q9H765 288 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 IL26Q9NPH9 171 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 IL36AQ9UHA7 158 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 OAS3Q9Y6K5 1087 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 TRBV5-4A0A0C4DH59 114 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 LOC100653049A0A140TA62 436 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 A8MX80 341 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 GAPDHSO14556 408 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 PRMT5O14744 637 aaPredicted RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 LINC01565O15544 149 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 OR1I1O60431 355 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 NPHS1O60500 1241 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 KRT34O76011 436 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 CD1DP15813 335 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 ME2P23368 584 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 FCARP24071 287 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 SERPINB5P36952 375 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 RPL14P50914 215 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 NAGLUP54802 743 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 NFATC2Q13469 925 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 EIF4HQ15056 248 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 ARSIQ5FYB1 569 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 SEL1L3Q68CR1 1132 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 LRRC66Q68CR7 880 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 CES5AQ6NT32 575 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 PIWIL4Q7Z3Z4 852 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 ISCA2Q86U28 154 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 TSPAN33Q86UF1 283 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 SERPINA9Q86WD7 417 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 CROCCP3Q8IVE0 287 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 YAF2Q8IY57 180 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 CPA6Q8N4T0 437 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 KDM1BQ8NB78 822 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 RHEBL1Q8TAI7 183 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 DERL2Q9GZP9 239 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 UTP6Q9NYH9 597 aaKnown RBP12.67□□□□□ -0.38
CLK3-201ENST00000345005 NCKIPSDQ9NZQ3 722 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 WDR37Q9Y2I8 494 aa12.67□□□□□ -0.38
CLK3-201ENST00000345005 TCF20Q9UGU0 1960 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 TSPAN11A1L157 253 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 MATN2O00339 956 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 LEFTY1O75610 366 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 BCAS2O75934 225 aaPredicted RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 IPO13O94829 963 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 TFAP2AP05549 437 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 SMIM18P0DKX4 95 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 ZNF30P17039 623 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 RPS3P23396 243 aaKnown RBP eCLIP12.66□□□□□ -0.381e-6■■□□□ 12.2
CLK3-201ENST00000345005 PIK3R1P27986 724 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 ARRB2P32121 409 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 BMP8BP34820 402 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 SLC6A11P48066 632 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 ATP6V0D1P61421 351 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 PTSQ03393 145 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 FCHO2Q0JRZ9 810 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 ADAM15Q13444 863 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 ART3Q13508 389 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 TLR1Q15399 786 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 MAPRE2Q15555 327 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 GAB4Q2WGN9 574 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 PIGGQ5H8A4 983 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 TCHHL1Q5QJ38 904 aaPredicted RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 IRAK1BP1Q5VVH5 260 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 PAQR3Q6TCH7 311 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 VITQ6UXI7 678 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 RBM44Q6ZP01 1051 aaKnown RBP12.66□□□□□ -0.38
CLK3-201ENST00000345005 TICAM1Q8IUC6 712 aa12.66□□□□□ -0.38
CLK3-201ENST00000345005 DSELQ8IZU8 1212 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms