RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 TMEM179Q6ZVK1 233 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 SLC26A9Q7LBE3 791 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 TMEM135Q86UB9 458 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 CUZD1Q86UP6 607 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 TXNRD3Q86VQ6 643 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 EID3Q8N140 333 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 COLGALT1Q8NBJ5 622 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 PCDH19Q8TAB3 1148 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 DNAJA4Q8WW22 397 aaPredicted RBP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 BIRC7Q96CA5 298 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 ATXN7L3BQ96GX2 97 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 GTPBP2Q9BX10 602 aaKnown RBP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 SLC22A4Q9H015 551 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 PPA2Q9H2U2 334 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 DYRK4Q9NR20 520 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 PLSCR3Q9NRY6 295 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 TRMT13Q9NUP7 481 aaKnown RBP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 MAT2BQ9NZL9 334 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 GABBR1Q9UBS5 961 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 NUDT5Q9UKK9 219 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 SLC39A10Q9ULF5 831 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 MAGED2Q9UNF1 606 aaPredicted RBP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 NOSIPQ9Y314 301 aaKnown RBP8.04□□□□□ -1.12
ATG4A-201ENST00000343524 SIP14410 1827 aa8.04□□□□□ -1.12
ATG4A-201ENST00000343524 A0A0X1KG70 313 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 OR2A25A4D2G3 310 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CCDC182A6NF36 153 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TMEM233B4DJY2 109 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ATP6V1G2-DDX39BF2Z307 99 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FXYD1O00168 92 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 NFIBO00712 420 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 PLD2O14939 933 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 NDUFA2O43678 99 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 DGAT1O75907 488 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LRIG2O94898 1065 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 GOT2P00505 430 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FTH1P02794 183 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 RPLP0P05388 317 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 NR3C2P08235 984 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SBK3P0C264 359 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ACADMP11310 421 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CD19P15391 556 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CYP2F1P24903 491 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ARNTP27540 789 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 HLA-DMAP28067 261 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 MTHFRP42898 656 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CTSKP43235 329 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CCR10P46092 362 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 PPP3CCP48454 512 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CDH13P55290 713 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SNX16P57768 344 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 KCNK10P57789 538 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 RAB10P61026 200 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 POU6F2P78424 691 aaPredicted RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TFAMQ00059 246 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 IL5RAQ01344 420 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SREBF2Q12772 1141 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 IFRD2Q12894 506 aaPredicted RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FOXD4Q12950 439 aaPredicted RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 KCNAB2Q13303 367 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CDK5R2Q13319 367 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 DSC3Q14574 896 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FSCN1Q16658 493 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TIMM50Q3ZCQ8 353 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FBXO43Q4G163 708 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TOR1AIP1Q5JTV8 583 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 PXDC1Q5TGL8 231 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SPRYD7Q5W111 196 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ZNF787Q6DD87 383 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TBPL2Q6SJ96 375 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LYPD8Q6UX82 237 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LARP4Q71RC2 724 aaKnown RBP eCLIP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SPATC1Q76KD6 591 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 EFL1Q7Z2Z2 1120 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SYVN1Q86TM6 617 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CDH24Q86UP0 819 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FAM35AQ86V20 835 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 KIF18BQ86Y91 864 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 PM20D2Q8IYS1 436 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TMEM151AQ8N4L1 468 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LINC00469Q8N7U9 141 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 FNDC5Q8NAU1 212 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ITFG1Q8TB96 612 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 KLHL6Q8WZ60 621 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LPAR1Q92633 364 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 AP2M1Q96CW1 435 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 C19orf60Q96EN9 201 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TNIP3Q96KP6 325 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 MAGEB10Q96LZ2 347 aaPredicted RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 MCMBPQ9BTE3 642 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 LRRC3Q9BY71 257 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 TMEM245Q9H330 911 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 CAB39LQ9H9S4 337 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 SCPEP1Q9HB40 452 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ACOT13Q9NPJ3 140 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ENTPD7Q9NQZ7 604 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 ING3Q9NXR8 418 aa8.03□□□□□ -1.12
ATG4A-201ENST00000343524 MRPL39Q9NYK5 338 aaKnown RBP8.03□□□□□ -1.12
ATG4A-201ENST00000343524 RCOR3Q9P2K3 495 aaPredicted RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms