RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CTNNB1P35222 781 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 RAB5BP61020 215 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 TIGD2Q4W5G0 525 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 NPNTQ6UXI9 565 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 SLC22A16Q86VW1 577 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 ANKRD13AQ8IZ07 590 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 ZNF101Q8IZC7 436 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 ESX1Q8N693 406 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 ZNF565Q8N9K5 539 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 CPT1CQ8TCG5 803 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 RAB2BQ8WUD1 216 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 SMARCD2Q92925 531 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 BARD1Q99728 777 aaKnown RBP12.72□□□□□ -0.37
USP47-202ENST00000339865 DNAAF2Q9NVR5 837 aaKnown RBP12.72□□□□□ -0.37
USP47-202ENST00000339865 C1orf109Q9NX04 203 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 PCDHGB5Q9Y5G0 923 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 TOPBP1Q92547 1522 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 PCDHGA12O60330 932 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 NOBOXO60393 691 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 CDH13P55290 713 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 RRP1BQ14684 758 aaKnown RBP12.72□□□□□ -0.37
USP47-202ENST00000339865 ATXN7L3Q14CW9 347 aaPredicted RBP12.72□□□□□ -0.37
USP47-202ENST00000339865 PON2Q15165 354 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 PIWIL4Q7Z3Z4 852 aaKnown RBP12.72□□□□□ -0.37
USP47-202ENST00000339865 ZNF606Q8WXB4 792 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 TRAF6Q9Y4K3 522 aa12.72□□□□□ -0.37
USP47-202ENST00000339865 C1orf196B1AJZ1 125 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PIRTP0C851 137 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 POLR2JP52435 117 aaKnown RBP12.71□□□□□ -0.37
USP47-202ENST00000339865 CBR4Q8N4T8 237 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 LDAHQ9H6V9 325 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 NCDNQ9UBB6 729 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 SLC27A6Q9Y2P4 619 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 AMHP03971 560 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 CXCL8P10145 99 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PRKACAP17612 351 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 CYP11B2P19099 503 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 NT5EP21589 574 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PM20D2Q8IYS1 436 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 TMEM203Q969S6 136 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 GMEB2Q9UKD1 530 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 AZIN1O14977 448 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 SLC37A4O43826 429 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 IL1BP01584 269 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 ZNF20P17024 532 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 SSR2P43308 183 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 SSX2Q16385 188 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 NFE2Q16621 373 aaPredicted RBP12.71□□□□□ -0.37
USP47-202ENST00000339865 SLC22A15Q8IZD6 547 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 LZTR1Q8N653 840 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 STK35Q8TDR2 534 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PGM2Q96G03 612 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PIWIL1Q96J94 861 aaKnown RBP12.71□□□□□ -0.37
USP47-202ENST00000339865 TMED9Q9BVK6 235 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 TM6SF2Q9BZW4 377 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 ARHGEF4Q9NR80 690 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 UBQLN2Q9UHD9 624 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 CDH22Q9UJ99 828 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PDE2AO00408 941 aaPredicted RBP12.71□□□□□ -0.37
USP47-202ENST00000339865 SLC6A9P48067 706 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 CTBP1Q13363 440 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PTPRNQ16849 979 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PARP6Q2NL67 630 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 PLEKHG6Q3KR16 790 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 FAM83HQ6ZRV2 1179 aaPredicted RBP12.71□□□□□ -0.37
USP47-202ENST00000339865 SPATA22Q8NHS9 363 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 RNF121Q9H920 327 aa12.71□□□□□ -0.37
USP47-202ENST00000339865 BANF1O75531 89 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 CD36P16671 472 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 RFTN2Q52LD8 501 aaPredicted RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 RNASEH2BQ5TBB1 312 aaKnown RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 CYP4V2Q6ZWL3 525 aaPredicted RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 ZNF720Q7Z2F6 126 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 ADAMTSL2Q86TH1 951 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 CD302Q8IX05 232 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 MREGQ8N565 214 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 ZNF557Q8N988 423 aaPredicted RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 EPYCQ99645 322 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 SNTG2Q9NY99 539 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 SH3BGRL2Q9UJC5 107 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 MDC1Q14676 2089 aaKnown RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 HK1P19367 917 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 ACVR2AP27037 513 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 FMO3P31513 532 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 PPIL2Q13356 520 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 WDR49Q8IV35 697 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 ABRAQ8N0Z2 381 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 OR5T1Q8NG75 326 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 DQX1Q8TE96 717 aaKnown RBP12.71□□□□□ -0.38
USP47-202ENST00000339865 SUSD6Q92537 303 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 BORCS8Q96FH0 119 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 PPP1R16AQ96I34 528 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 WACQ9BTA9 647 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 DPAGT1Q9H3H5 408 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 PNPOQ9NVS9 261 aa12.71□□□□□ -0.38
USP47-202ENST00000339865 ESPL1Q14674 2120 aa12.7□□□□□ -0.38
USP47-202ENST00000339865 GSTT2P0CG29 244 aa12.7□□□□□ -0.38
USP47-202ENST00000339865 RPS9P46781 194 aaKnown RBP12.7□□□□□ -0.38
USP47-202ENST00000339865 OR12D2P58182 307 aa12.7□□□□□ -0.38
USP47-202ENST00000339865 TOMM5Q8N4H5 51 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms