RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CCL22O00626 93 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 POP7O75817 140 aaKnown RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 COPZ1P61923 177 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 RPL38P63173 70 aaKnown RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 CYP4F2P78329 520 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 GTF2H2Q13888 395 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 GTF2H2CQ6P1K8 395 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ZNF75CPQ92670 426 aaPredicted RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 PPCDCQ96CD2 204 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CDKN2AIPNLQ96HQ2 116 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 LRRC4CQ9HCJ2 640 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TMEM98Q9Y2Y6 226 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 RAP2CQ9Y3L5 183 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 COL4A1P02462 1669 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 VEGFDO43915 354 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 MT-CO1P00395 513 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 JMJD7P0C870 316 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 SOX11P35716 441 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PBX2P40425 430 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 SLC1A2P43004 574 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CLCNKAP51800 687 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 NCEH1Q6PIU2 408 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ICA1LQ8NDH6 482 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ATOH1Q92858 354 aaPredicted RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 PWWP2AQ96N64 755 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 KCNK4Q9NYG8 393 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 SALL4Q9UJQ4 1053 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 RRP15Q9Y3B9 282 aaKnown RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 DCLK1O15075 740 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 MID1O15344 667 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CYP17A1P05093 508 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CRHR1P34998 444 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 HNRNPKP61978 463 aaKnown RBP eCLIP10.03□□□□□ -0.8
USP54-201ENST00000339859 SP140Q13342 867 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 DPYSQ14117 519 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 RAB41Q5JT25 222 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PQLC3Q8N755 202 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ZDHHC12Q96GR4 267 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 HHIPQ96QV1 700 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CAAP1Q9H8G2 361 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 RC3H2Q9HBD1 1191 aaKnown RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 CXXC1Q9P0U4 656 aaPredicted RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 PRKAG3Q9UGI9 489 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ECI2O75521 394 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 EPORP19235 508 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TAS2R50P59544 299 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PDK4Q16654 411 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ZC3H12BQ5HYM0 836 aaKnown RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 ZCCHC23Q6ZST2 131 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 C16orf62Q7Z3J2 963 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 FAM174AQ8TBP5 190 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 DNASE1L2Q92874 299 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TADA1Q96BN2 335 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TUBGCP6Q96RT7 1819 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CCT7Q99832 543 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PRRG3Q9BZD7 231 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ADGRE2Q9UHX3 823 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ZNF490Q9ULM2 529 aaPredicted RBP10.03□□□□□ -0.8
USP54-201ENST00000339859 CER1O95813 267 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ASGR2P07307 311 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PCSK2P16519 638 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 PTGIRP43119 386 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 ADAM17P78536 824 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 CHRNB3Q05901 458 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 FLOT2Q14254 428 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TTC27Q6P3X3 843 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 TMEM130Q8N3G9 435 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 DPYSL5Q9BPU6 564 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 HEBP1Q9NRV9 189 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 IL1RAPL1Q9NZN1 696 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 COPS7AQ9UBW8 275 aa10.03□□□□□ -0.8
USP54-201ENST00000339859 MYO1CO00159 1063 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 ADAM12O43184 909 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A9O60656 530 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 KCNJ13O60928 360 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 METTL18O95568 372 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 ZNF682O95780 498 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A6P19224 532 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A1P22309 533 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A4P22310 534 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A3P35503 534 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A5P35504 534 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 HNF1BP35680 557 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 TXNRD3NBQ6F5E7 133 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 ACTRT2Q8TDY3 377 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 KIAA1143Q96AT1 154 aaPredicted RBP10.02□□□□□ -0.8
USP54-201ENST00000339859 MYCBPQ99417 103 aaPredicted RBP10.02□□□□□ -0.8
USP54-201ENST00000339859 NDC1Q9BTX1 674 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 SLC25A23Q9BV35 468 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A7Q9HAW7 530 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A10Q9HAW8 530 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 UGT1A8Q9HAW9 530 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 MFHAS1Q9Y4C4 1052 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 ATAD5Q96QE3 1844 aa10.02□□□□□ -0.8
USP54-201ENST00000339859 H3BNH8 94 aa10.02□□□□□ -0.81
USP54-201ENST00000339859 KLK3P07288 261 aaPredicted RBP10.02□□□□□ -0.81
USP54-201ENST00000339859 ADRB3P13945 408 aa10.02□□□□□ -0.81
USP54-201ENST00000339859 JUNDP17535 347 aa10.02□□□□□ -0.81
USP54-201ENST00000339859 ASMTP46597 345 aa10.02□□□□□ -0.81
USP54-201ENST00000339859 NAGLUP54802 743 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms