RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 REM1O75628 298 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 VAPBO95292 243 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CHGBP05060 677 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NR2C1P13056 603 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ENO3P13929 434 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 KCNE1P15382 129 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 TSHRP16473 764 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MTTPP55157 894 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 DLG4P78352 724 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF252P-AS1Q0IIN9 211 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CDKN3Q16667 212 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SLC10A6Q3KNW5 377 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ARMCX4Q5H9R4 360 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CATSPEREQ5SY80 951 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FAM171BQ6P995 826 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 RFX8Q6ZV50 586 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 UBE2R2Q712K3 238 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 LIX1LQ8IVB5 337 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SNX33Q8WV41 574 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NKD1Q969G9 470 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 EFHD2Q96C19 240 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FAXDC2Q96IV6 333 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SLC17A9Q9BYT1 436 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 OR2AG1Q9H205 316 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 AGO3Q9H9G7 860 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 KLHL33A6NCF5 533 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ZNF726A6NNF4 738 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 AGPSO00116 658 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MID1O15344 667 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 IDH3BO43837 385 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MFAP3LO75121 409 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CCNE2O96020 404 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PABPC4LP0CB38 370 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ADRA1DP25100 572 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MIPP30301 263 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CLCN7P51798 805 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 RPS24P62847 133 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CYLC2Q14093 348 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NEPROQ6NW34 567 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PSTKQ8IV42 348 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CYP4Z2PQ8N1L4 340 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 WDR36Q8NI36 951 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 IMPAD1Q9NX62 359 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 EPHA6Q9UF33 1036 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 GJD2Q9UKL4 321 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PCDHA3Q9Y5H8 950 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CCT8L1PA6NM43 557 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 TRPC5OSA6NMA1 111 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FLRT2O43155 660 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 AKAP3O75969 853 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 KITP10721 976 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SHMT2P34897 504 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SOX11P35716 441 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 GGCXP38435 758 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 GALK1P51570 392 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CCL11P51671 97 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SCGB2A2Q13296 93 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 COL9A3Q14050 684 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SEMA3AQ14563 771 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ZACNQ401N2 412 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FAM153CQ494X1 144 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 C9orf50Q5SZB4 431 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 LRRC6Q86X45 466 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 STX12Q86Y82 276 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 STAG3L4Q8TBR4 150 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PROX1Q92786 737 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SGF29Q96ES7 293 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 SECISBP2Q96T21 854 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ELAC2Q9BQ52 826 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MRPL1Q9BYD6 325 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FZD8Q9H461 694 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 EPB41L1Q9H4G0 881 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MRM3Q9HC36 420 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CD84Q9UIB8 345 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PADI1Q9ULC6 663 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 GNEQ9Y223 722 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 AP4S1Q9Y587 144 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 E7EQ34 232 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ATMINO43313 823 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 FGRP09769 529 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 VAV1P15498 845 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 CEBPBP17676 345 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 MPLP40238 635 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NSG1P42857 185 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 DGKQP52824 942 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 OTUD4Q01804 1114 aaKnown RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 HHEXQ03014 270 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 IL10RBQ08334 325 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 PARP6Q2NL67 630 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 NT5DC1Q5TFE4 455 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 DCAF12L1Q5VU92 463 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 TCEAL8Q8IYN2 117 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ADAMTS15Q8TE58 950 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 STYXQ8WUJ0 223 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 LPAR4Q99677 370 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 TWSG1Q9GZX9 223 aa4.97□□□□□ -1.61
SCN1A-218ENST00000640036 ELL3Q9HB65 397 aaPredicted RBP4.97□□□□□ -1.61
SCN1A-218ENST00000640036 COL20A1Q9P218 1284 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms