RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 CATSPEREQ5SY80 951 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 JADE1Q6IE81 842 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PNCKQ6P2M8 343 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 FAM131BQ86XD5 332 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 MFSD6LQ8IWD5 586 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 C12orf29Q8N999 325 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 SETD9Q8NE22 299 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZHX1-C8orf76Q96EF9 292 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 C3orf30Q96M34 536 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF560Q96MR9 790 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 DEPDC7Q96QD5 511 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 MBOAT4Q96T53 435 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 BTBD2Q9BX70 525 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 UGT2B28Q9BY64 529 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 KAT8Q9H7Z6 458 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 COMMD8Q9NX08 183 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 DNAJB9Q9UBS3 223 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 FBXO5Q9UKT4 447 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 N6AMT1Q9Y5N5 214 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 KIAA1217Q5T5P2 1943 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 IGKV6D-21A0A0A0MT36 114 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 GRXCR2A6NFK2 248 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC154A6NI56 674 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC85CA6NKD9 419 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CENPXA8MT69 81 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 LACTBL1A8MY62 500 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 EEF2KO00418 725 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 TBX1O43435 398 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ABCB1P08183 1280 aaPredicted RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 KCNA5P22460 613 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 HRH2P25021 359 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 MATKP42679 507 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 MTHFRP42898 656 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ACADSBP45954 432 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 RBP5P82980 135 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PPP2R2BQ00005 443 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 NFKB2Q00653 900 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PIGFQ07326 219 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ARHGAP1Q07960 439 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 TRAF3Q13114 568 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CTBP1Q13363 440 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 SLC25A52Q3SY17 297 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZFP69Q49AA0 526 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF691Q5VV52 312 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 UBE2UQ5VVX9 321 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 FAM160B1Q5W0V3 765 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 LHX8Q68G74 356 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 SPATA19Q7Z5L4 167 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CCDC117Q8IWD4 279 aaPredicted RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 DENND6AQ8IWF6 608 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ARRDC4Q8NCT1 418 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 C2CD4AQ8NCU7 369 aaPredicted RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 PPHLN1Q8NEY8 458 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ITFG1Q8TB96 612 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 LGALS12Q96DT0 336 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 REXO5Q96IC2 774 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 APOL2Q9BQE5 337 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CDT1Q9H211 546 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 SLA2Q9H6Q3 261 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CCNB1IP1Q9NPC3 277 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 DDX28Q9NUL7 540 aaKnown RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 TMEM45AQ9NWC5 275 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 SLCO3A1Q9UIG8 710 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 TNFSF13BQ9Y275 285 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 CAB39Q9Y376 341 aaPredicted RBP10.72□□□□□ -0.69
UPF3A-212ENST00000619079 ORC6Q9Y5N6 252 aa10.72□□□□□ -0.69
UPF3A-212ENST00000619079 LOC100130705A0A1B0GUX0 176 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 CLDN24A6NM45 220 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 ZBBXA8MT70 800 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 UBFD1O14562 309 aaKnown RBP10.71□□□□□ -0.69
UPF3A-212ENST00000619079 DCLK1O15075 740 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 CNTN5O94779 1100 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 MFN2O95140 757 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 TCF3P15923 654 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 NFKB1P19838 968 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 CHRM3P20309 590 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 SLC26A3P40879 764 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 SLC1A2P43004 574 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 C19orf57Q0VDD7 668 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 KCNAB2Q13303 367 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 TRIM71Q2Q1W2 868 aaKnown RBP10.71□□□□□ -0.69
UPF3A-212ENST00000619079 ZC3H12BQ5HYM0 836 aaKnown RBP10.71□□□□□ -0.69
UPF3A-212ENST00000619079 ZNF678Q5SXM1 525 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 GLYATQ6IB77 296 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 ERAP2Q6P179 960 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 CCBE1Q6UXH8 406 aaPredicted RBP10.71□□□□□ -0.69
UPF3A-212ENST00000619079 BPHLQ86WA6 291 aaPredicted RBP10.71□□□□□ -0.69
UPF3A-212ENST00000619079 OR6F1Q8NGZ6 308 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 MCOLN3Q8TDD5 553 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 PHF21BQ96EK2 531 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 FAM167AQ96KS9 214 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 AMBRA1Q9C0C7 1298 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 SLC52A3Q9NQ40 469 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 SCN3BQ9NY72 215 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 Q9Y3F1 56 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 DNAJC15Q9Y5T4 150 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 V9GYQ6 96 aa10.71□□□□□ -0.69
UPF3A-212ENST00000619079 DNAH12Q6ZR08 3092 aa10.71□□□□□ -0.7
UPF3A-212ENST00000619079 ANK1P16157 1881 aa10.71□□□□□ -0.7
UPF3A-212ENST00000619079 LRRC37A2A6NM11 1700 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms